FMO04769.5prime Sequence
1229 bp (1038 high quality bases) assembled on 2008-08-08
> FMO04769.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGACAG
CGAATTCGAGGAGTTCCACAGGCCCATATTTGAGCCACATACGATTGCTG
GATTCGGATCAGGAGCAGGCAGCAAGAAGAATAATCCACATGCATTTTAC
TCCTTAATTCCCAACGATGACCTGGAGGACTCGCACTCCTCGAAGAGCGA
TGGCGACGGTTCGGATCAGGAGGATGGCATTGGTCTTGTGGATCACGAGC
CCAAGATGCGTCAAGTGGAGGACGATGAGCTGGGCGACGGGCTGAAAGTC
ACTCTGTCCTCGGACGGCTCGCTGGACACCAACGACTCGTTTAATTCGCA
CCGACATCATCCGTTGAACCACCAGGATGCGATTGGTGGCTTCCTGGGCA
TGGACACCAGTGGATTGGGTGGCAATAGTGCACCTGTGACCATTGGAGCC
AGCACAGATCTGCTGGCACCCAATACAGCTGCCACGCGACGTCGTCGCAA
GTTGCCGGAAATACCGAAAAACAAGAAATGTGGCTCCAACTTTGGCTCCC
TGGCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTT
CGCAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGAT
GGACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACG
TGGACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATG
TCGCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTT
TGGGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTG
GTCTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATC
GGCGACGCCATCTACGTGCAAAGGAGGCCGAGGACCTGTGGTGCGAGGGT
TGTGATCTCCGCACGGGAGGCAGGCATCTTCCCCTCGGCCTACGCCGTGA
CCTGACTACACGAGTTCGATCCCACAGTGCAGCTGGTGAGATACGCTTTC
TGCTGGGCTACCTCCGGATCGTGGAGACGCTGGCGCACAAGGCACCGGGT
TCGTTGCAAGCGGTGCCAGAATGTTCGGATTACGCCACTCACGACGAACG
AACGTGCATCTGTAAGTCGAACTGAACTCGCATGGATCGATCGGTCGATT
CAACCATAGGCAGAGGACCTTGTTACTCG
FMO04769.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aplip1-RA | 2390 | CG1200-RA | 223..1303 | 36..1105 | 4975 | 98.2 | Plus |
| Aplip1-RB | 2411 | CG1200-RB | 223..1324 | 36..1105 | 4755 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1197530..1198102 | 530..1092 | 2275 | 96 | Plus |
| 3L | 28110227 | 3L | 1196937..1197315 | 153..531 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 1196539..1196655 | 36..152 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:54 has no hits.
FMO04769.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:13 Download gff for
FMO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 219..1289 | 32..1092 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:08 Download gff for
FMO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 215..1285 | 32..1092 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:44 Download gff for
FMO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 219..1289 | 32..1092 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:44 Download gff for
FMO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1196540..1196655 | 37..152 | 100 | -> | Plus |
| 3L | 1196937..1197313 | 153..529 | 100 | -> | Plus |
| 3L | 1197530..1198102 | 530..1092 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:13 Download gff for
FMO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1196540..1196655 | 37..152 | 100 | -> | Plus |
| arm_3L | 1196937..1197313 | 153..529 | 100 | -> | Plus |
| arm_3L | 1197530..1198102 | 530..1092 | 97 | == | Plus |
