Clone FMO04772 Report

Search the DGRC for FMO04772

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:47
Well:72
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(2)k09913-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04772.5prime Sequence

1022 bp (1022 high quality bases) assembled on 2008-08-08

> FMO04772.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACTTCCTAATT
GAAATAACATTACTGGTCATATTGGCAATTATACTGCTGAAGATCTATCA
TCGGGCGAAACGTAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT
CGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGTGG
GCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAGCGCCCTG
CGCAACTATACGCTGTACCACCTGAAGACATTCCACAACCAGGCCACCAT
CCACTACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTCAAGGCCC
CGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCCGTCCTCC
AACCAGTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGGTTACCTT
CAAGTGCTGGGAGCGGTCCCAGCACGCCGCCCCACTATATACGGCATCGC
GAGGAGTACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGGTGTCTG
GAGGCATCGGCGTGCCGAAGCGCGCCAAGTTGGCAGCTTTCTAGACATTC
GTTTGGCGGCGCGGGGCCCAGT

FMO04772.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RD 1451 CG3082-RD 176..1128 31..982 4680 99.6 Plus
l(2)k09913-RH 1259 CG3082-RH 62..936 108..982 4285 99.5 Plus
l(2)k09913-RF 1694 CG3082-RF 501..1371 113..982 4285 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071552 392..982 2815 99.5 Plus
2R 25286936 2R 23070607..23070900 114..407 1425 99 Plus
2R 25286936 2R 23069580..23069662 31..113 400 98.8 Plus
Blast to na_te.dros performed 2014-11-28 20:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 627..721 113 60.2 Plus
G5 4856 G5 G5_DM 4856bp 2673..2730 215..272 110 65.5 Plus

FMO04772.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:07 Download gff for FMO04772.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 170..1137 24..992 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:29 Download gff for FMO04772.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 170..1137 24..992 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:07 Download gff for FMO04772.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 170..1137 24..992 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:07 Download gff for FMO04772.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23069574..23069662 24..113 96 -> Plus
2R 23070607..23070888 114..395 100 -> Plus
2R 23070965..23071555 396..986 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:07 Download gff for FMO04772.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18957097..18957185 24..113 96 -> Plus
arm_2R 18958130..18958411 114..395 100 -> Plus
arm_2R 18958488..18959078 396..986 99 -> Plus