FMO04772.5prime Sequence
1022 bp (1022 high quality bases) assembled on 2008-08-08
> FMO04772.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACTTCCTAATT
GAAATAACATTACTGGTCATATTGGCAATTATACTGCTGAAGATCTATCA
TCGGGCGAAACGTAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT
CGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGTGG
GCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAGCGCCCTG
CGCAACTATACGCTGTACCACCTGAAGACATTCCACAACCAGGCCACCAT
CCACTACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTCAAGGCCC
CGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCCGTCCTCC
AACCAGTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGGTTACCTT
CAAGTGCTGGGAGCGGTCCCAGCACGCCGCCCCACTATATACGGCATCGC
GAGGAGTACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGGTGTCTG
GAGGCATCGGCGTGCCGAAGCGCGCCAAGTTGGCAGCTTTCTAGACATTC
GTTTGGCGGCGCGGGGCCCAGT
FMO04772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RD | 1451 | CG3082-RD | 176..1128 | 31..982 | 4680 | 99.6 | Plus |
l(2)k09913-RH | 1259 | CG3082-RH | 62..936 | 108..982 | 4285 | 99.5 | Plus |
l(2)k09913-RF | 1694 | CG3082-RF | 501..1371 | 113..982 | 4285 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071552 | 392..982 | 2815 | 99.5 | Plus |
2R | 25286936 | 2R | 23070607..23070900 | 114..407 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23069580..23069662 | 31..113 | 400 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 627..721 | 113 | 60.2 | Plus |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 215..272 | 110 | 65.5 | Plus |
FMO04772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:07 Download gff for
FMO04772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 170..1137 | 24..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:29 Download gff for
FMO04772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 170..1137 | 24..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:07 Download gff for
FMO04772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 170..1137 | 24..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:07 Download gff for
FMO04772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23069574..23069662 | 24..113 | 96 | -> | Plus |
2R | 23070607..23070888 | 114..395 | 100 | -> | Plus |
2R | 23070965..23071555 | 396..986 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:07 Download gff for
FMO04772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18957097..18957185 | 24..113 | 96 | -> | Plus |
arm_2R | 18958130..18958411 | 114..395 | 100 | -> | Plus |
arm_2R | 18958488..18959078 | 396..986 | 99 | -> | Plus |