FMO04773.5prime Sequence
1060 bp (1040 high quality bases) assembled on 2008-08-08
> FMO04773.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCATGGCTAAA
CGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCTGCAGCG
CGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCACACCCC
ACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGAGACGCG
TGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGCTCAGTT
TGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATACGTGGAA
CTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAAAGAGGA
CTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCAAGGTGG
AGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTCCGTTTG
CCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCGCATTAT
AATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGCTGTGGA
ACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGCGCTGCC
GTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTACAACAT
CTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTTTAGTGG
ATATTTTCGACATCAATTTGGATTTCTTCGGCCTTGTAATGTCGAATTTG
GCAAAACTTTATCCCACGGACACCGTCAGTGAAATCAACGACAAGCACAT
GGCACCCTGGGCCGAGATTTGCCAGCGCAATGGCATCGACAACACCCCGC
TGACACCGTACCTAGATGAGGAGCAGCTCCAGCACAAGCACCTCTACTTG
GATAACACGAACTGAAGACTTTGGCTACGTGCTGCAGCATCCGAAAGTCA
CTCGCGAGCTGCTCATGGAGATGATTACGACTATGTGAAGCAGCAATTGT
TTCCGAAATCGTTGGTCTTGCAAGCTTTCTAGAACATTCGTTGGCGCCGC
CGGGCCCAGT
FMO04773.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5854-RA | 1562 | CG5854-RA | 242..1224 | 37..1016 | 4840 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23934563..23934932 | 118..487 | 1850 | 100 | Plus |
| 3R | 32079331 | 3R | 23935029..23935297 | 488..756 | 1345 | 100 | Plus |
| 3R | 32079331 | 3R | 23935364..23935626 | 757..1016 | 1165 | 98.9 | Plus |
| 3R | 32079331 | 3R | 23934263..23934344 | 37..118 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:04 has no hits.
FMO04773.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:33 Download gff for
FMO04773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 235..1228 | 28..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:09 Download gff for
FMO04773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RB | 261..1254 | 28..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:30 Download gff for
FMO04773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 235..1228 | 28..1019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:30 Download gff for
FMO04773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23935029..23935297 | 488..756 | 100 | -> | Plus |
| 3R | 23935364..23935630 | 757..1019 | 98 | | Plus |
| 3R | 23934564..23934932 | 119..487 | 100 | -> | Plus |
| 3R | 23934256..23934344 | 28..118 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:33 Download gff for
FMO04773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19760286..19760654 | 119..487 | 100 | -> | Plus |
| arm_3R | 19760751..19761019 | 488..756 | 100 | -> | Plus |
| arm_3R | 19759978..19760066 | 28..118 | 95 | -> | Plus |
| arm_3R | 19761086..19761352 | 757..1019 | 98 | | Plus |
