FMO04776.5prime Sequence
844 bp (844 high quality bases) assembled on 2008-08-08
> FMO04776.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGCCCACAT
GCAGCAGCAGTGTGGCGGAATTGGCCAAATACAGTGAGGATGATGTGGAA
ACGGATGAGTCCAAGGTGGTGGAGCATCAGGAATATGCCGAAGCGCTGTC
AATGTCCGGGGAAAGTCGTAAGCGGAAACGATGGACTCGAAGGTCCTGCT
GCACTCGCCAAGTCCTGAGTACGGGCGCCATTTTCATCGCCCTTCTGCTC
ATCATCGGCGCCATTTACATGCACTTAAGACAGAAGCATCATCTGGGCCG
ACTGCACATCAATCTCAAGGATCGGGGGCAAGTGGAGGTCCTGGAGGAGG
ACTTTCCCATGGTCACCGCTGCGGGAGTGGATGCCCAGACCTCGACGATA
ACAACATTCCAGCCGCCTCCGACATCCTCCCCAGAGCCCAGTGCCAAGTG
CCTGGACTGCATGGCCACCACTGCCACGGATAATATTCCGGCAATCTGCA
GGCACCGAGGACGACCAGAGGAGCCGTGCGGCATTTATCGCATCTCCCAC
GTCTACTGGCAGGACGCACTCCGGATAATTGACCCGGACGACTCACTCGC
CCGGGACTACGGAAGATGCGTGGTGGATGTCCAGTGCGCCGAGCGTATTG
TGCGTAGCTATGTGCAGCGATATGGTGGCGAGGATTGCAATGGAGACGGA
CGGATCGAGTGTCGGGATCATGTGAGGCTGCACATGAGAGGACCCGGCGG
CTGCCGCAGGCAGGAGCCACTGGGGAGCCTGTCTGAGAGGAGATTGGAAA
ACTGCTTGAAATACATGGGGATTACTGCAAGCTTTCTAGACCAT
FMO04776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14823-RA | 2098 | CG14823-RA | 66..859 | 33..826 | 3940 | 99.7 | Plus |
| CG14823-RD | 1108 | CG14823-RD | 655..1100 | 381..826 | 2215 | 99.8 | Plus |
| CG14823-RB | 974 | CG14823-RB | 521..966 | 381..826 | 2215 | 99.8 | Plus |
| CG14823-RD | 1108 | CG14823-RD | 66..413 | 33..380 | 1725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7066379..7066726 | 33..380 | 1725 | 99.7 | Plus |
| 3L | 28110227 | 3L | 7067554..7067779 | 380..605 | 1130 | 100 | Plus |
| 3L | 28110227 | 3L | 7068003..7068224 | 605..826 | 1095 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:51 has no hits.
FMO04776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:12 Download gff for
FMO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14823-RA | 62..862 | 30..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:58 Download gff for
FMO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14823-RA | 62..862 | 30..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:54 Download gff for
FMO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14823-RA | 62..862 | 30..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:54 Download gff for
FMO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7067555..7067779 | 381..605 | 100 | -> | Plus |
| 3L | 7068004..7068227 | 606..830 | 98 | | Plus |
| 3L | 7066367..7066726 | 16..380 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:12 Download gff for
FMO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7059467..7059826 | 16..380 | 96 | -> | Plus |
| arm_3L | 7060655..7060879 | 381..605 | 100 | -> | Plus |
| arm_3L | 7061104..7061327 | 606..830 | 98 | | Plus |
