FMO04778.5prime Sequence
1198 bp (1046 high quality bases) assembled on 2008-08-08
> FMO04778.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCGACAA
CGTGGTGACGGAACTAAATAACTTGGATTTGAACAATCAAAAGGCTGCCA
AGATGAAGAAGGAGAAAAAGGAGAAGCCATCCGGCGGTGGAGATACTCGC
AAGGAACTCAGTCCCTTGCCCAAGTACATCGAGGAGCGCAATGTCTTCTG
GGAGAAGTGCAAGGCGGAATACGAGGCCGAACTGGCGGCCAAGAAGCGTG
AGCCCATCAAGGTGACACTGCCCGATGGCAAGCAGGTGGACGCCACCTCC
TGGGAGACCACTCCGTACGAAGTGGCCCGCGGCATTAGTCAGGGTCTCGC
TGACAACACCGTCATCTCCAAGGTGAACGGCGAGGTGTGGGATTTGGACC
GTGTGCTCGAGGGAAACTGCACCCTGCAGCTTCTCAAGTTCGACGACCCT
GAGGCGCAGGCCGTCTTCTGGCACAGCTCTGCCCACATCATGGGTGAGGC
CATGGAGCGCATCTATGGTGGACACCTGTGCTACGGTCCGCCCATTGAAA
ACGGCTTCTACTACGACATGCATCTGGAGGGCGAGGGTATCTCCACCAAC
GACTACGGCGCCATGGAGGGTCTGGTTAAGCAAATTGTCAAGGAGAAGCA
GAACTTCGAACGTCTGGAGATGAAGAAGTCCGACCTGCTGGAGATGTTCA
AATACAATGAGTTCAAGGTGCGCATTCTCAACGAGAAGGTGACCACCGAC
CGCACCACTGTCTACAAGTGCGGTTCTTTGATCGATCTCTGCCGCGGACC
TCATGTTCGTCACACCGGCAAGGTGAAGGCCCTGAAGATCACCAAGAACT
CCTCTACCTACTGGGAGGGTAAGGCTGACGCTGAGACACTGCAACGCGTC
TACGGCATCTCGTTCCCCGACCCGAAGCAGCTCAAGGAGTGGGAGAACTT
CAGAGAGGCGGCTAAGCGTGATCACCGCAAAATCGGTCGCGAGCAGAGCT
GTCTTCTTCATGAACTTTCGCTGCTCATGCTTTTCCAGCCGCGAGGAGCG
CAATCTACAACACCTGATGGGCTCATCAGCGAATAAGAAGCGTGTCAGAA
GTCATTTCCACATCTACAGCTAGTGGGATGACCTCGCATGCAGCATGCCG
AAAACTGTTTCCTCAGAGCCGAAAAAAAAGTGCCACCTCGGCACAGTG
FMO04778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-thr-RB | 2298 | CG5353-RB | 31..1081 | 40..1078 | 4955 | 98.9 | Plus |
| Aats-thr-RD | 2796 | CG5353-RD | 306..1303 | 93..1078 | 4690 | 98.8 | Plus |
| Aats-thr-RA | 2520 | CG5353-RA | 306..1303 | 93..1078 | 4690 | 98.8 | Plus |
| Aats-thr-RD | 2796 | CG5353-RD | 31..86 | 40..95 | 280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12104687..12105121 | 154..588 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 12105176..12105661 | 589..1064 | 1970 | 97.5 | Plus |
| 2L | 23513712 | 2L | 12104490..12104552 | 92..154 | 315 | 100 | Plus |
| 2L | 23513712 | 2L | 12103781..12103836 | 40..95 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:02 has no hits.
FMO04778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:30 Download gff for
FMO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 31..1129 | 40..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:17 Download gff for
FMO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 48..1150 | 40..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:43 Download gff for
FMO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 31..1129 | 40..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:43 Download gff for
FMO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12103780..12103834 | 40..93 | 98 | -> | Plus |
| 2L | 12104492..12104552 | 94..154 | 100 | -> | Plus |
| 2L | 12104688..12105121 | 155..588 | 100 | -> | Plus |
| 2L | 12105176..12105725 | 589..1118 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:30 Download gff for
FMO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12103780..12103834 | 40..93 | 98 | -> | Plus |
| arm_2L | 12104492..12104552 | 94..154 | 100 | -> | Plus |
| arm_2L | 12104688..12105121 | 155..588 | 100 | -> | Plus |
| arm_2L | 12105176..12105725 | 589..1118 | 95 | | Plus |
