FMO04780.5prime Sequence
1198 bp (1037 high quality bases) assembled on 2008-08-08
> FMO04780.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTACCACTGT
GAAGAATCGTCGCTTTGAGGATGAAGACTCCGGCTTGGGTGTCCGTCACT
TCCAGGTCTTACTGCTATTCTTTGCCCTTACGGTGGCCTATGGCTGCCGA
GTCAACCTCTCCGTGGCTGTGGTGGCCATGACCGATGCCGCCTCCGTCAA
TCCCGATTTTCCCGAGTATAATTGGTCGGAGAAGACGAAATCCCTGCTGC
TGAGCAGCTTCTTCTGGGGCTATGTGATCACCCAGGTGCCAGCTGGTCAA
TTGGCTCGCAAATATGGCGGCAAAGTGATGATCCTGTCGGGACTGGCCAT
CTGCTCGATCCTGAACATCCTGACACCCATTTGCGCAAAGATCGGAGGCT
GGCAGCTGGTCTGCGCCCTACGAGTGGTGGAAGGTCTGTGCCAGGGCGTG
GTCTTTCCCTCAACCCACACGATCCTCTCCCAATGGGCACCGCCCAAGGA
GCGTGCCACGTTGGGAACCTGTGCCTACTCGGGTAACCAGTTCGGAACGA
TTCTCATGCTGGCCACCAGTGGAGTGATTGCAGCCTCGCCAATCGGCTGG
CCCAGCATCTTCTATATCTCTGGAGGAATCGGATGCGTGTGGTCGGTGGT
GTACTTCTTCTTCGGCGCAGGATCGCCACAAGAGTGCAAGTCCATTTCGG
CGGAGGAGAAGAAGCTGATCGAGATGTCGCAGGCCGACGAGGTGAGCGGT
GGCCAGGAACAGCCGAAGGAGCAGTTGCCCACGCCCTGACTGAGCTTCTT
CACTTCACCCGCTTTCCTCGTCCTGATCGTCTCACACTCGGTGCACAACT
GGGGTTTCTGGACCCTGCTCACCGAGATCCCCAGCTACATGAAGAACATC
CTGGGCAAAGACATCAAGTCGAATGCTCTTCTCTCTCGCTGCCCTACGTC
TGCATGTTCGCCATGTCCTTTGTATTCTCGTCGATATCCGCACAGTGACA
CCGCACTGCATTTCAGGTCTACGAGCAGAGCTCTCAACTCCATTGGTCTG
TGATTCTATGTACCTGTGCCTGCCTATGGTGAACGAATCAGTCGGACTGC
TGGTCCTACCGGTACGGTGGCATGAATGAGCACTACTGACTCACAGACCA
TGCGATTGTTCCGCTATCTCCTTGGACCCCTATGACATCTCTCACAAC
FMO04780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-RB | 1783 | CG15096-RB | 100..1124 | 37..1052 | 4880 | 98.9 | Plus |
| CG15096-RC | 3536 | CG15096-RC | 1893..2877 | 77..1052 | 4680 | 98.9 | Plus |
| CG15096-RA | 2060 | CG15096-RA | 417..1401 | 77..1052 | 4680 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18809192..18809975 | 996..214 | 3840 | 99.6 | Minus |
| 2R | 25286936 | 2R | 18810041..18810180 | 214..75 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 18811322..18811361 | 76..37 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:42 has no hits.
FMO04780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:11 Download gff for
FMO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 97..1143 | 30..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:29 Download gff for
FMO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 95..1141 | 30..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:15 Download gff for
FMO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 97..1143 | 30..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:15 Download gff for
FMO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18809118..18809975 | 214..1060 | 98 | <- | Minus |
| 2R | 18810042..18810178 | 77..213 | 100 | <- | Minus |
| 2R | 18811322..18811362 | 37..76 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:11 Download gff for
FMO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14696623..14697480 | 214..1060 | 98 | <- | Minus |
| arm_2R | 14697547..14697683 | 77..213 | 100 | <- | Minus |
| arm_2R | 14698827..14698867 | 37..76 | 97 | <- | Minus |
