FMO04781.5prime Sequence
771 bp (771 high quality bases) assembled on 2008-08-08
> FMO04781.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTCTCAG
GCAGTTTCAGAACATTTCCCGCCAGGCCCTCAGGTGCTACTCGATGAGGC
GGACCCCTGGCCCCTTCCTCGAGCTGAGTCGCGGTCAGAGGCAGTGCCTT
CGCCTCTGCACCATCATGCTTCCCGTGAGCTGTGCGGCCACGCCCATGAA
CGCCATCTCCTCAGCCGCCCAGCACTCCACAGCAGCTGCCATCGACATGT
CTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTTCACCGTG
AAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGGGCAAGGT
GGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAGAACAACT
ACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGGCCTGGTG
ATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGGAGGCCGA
TGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGACATCGGCG
AGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCCGCTGTAC
AAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAATCAAGTG
GAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATCAACCGAT
ATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGAAAAGCTG
CTGGCAAGCTTTCTAGACCAT
FMO04781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHGPx-RD | 1014 | CG12013-RD | 114..827 | 40..753 | 3555 | 99.9 | Plus |
| PHGPx-RA | 803 | CG12013-RA | 104..616 | 241..753 | 2565 | 100 | Plus |
| PHGPx-RC | 1148 | CG12013-RC | 449..961 | 241..753 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3327860..3328185 | 241..566 | 1630 | 100 | Plus |
| 3L | 28110227 | 3L | 3327353..3327553 | 40..240 | 990 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3328249..3328439 | 563..753 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:37 has no hits.
FMO04781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:44 Download gff for
FMO04781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 112..827 | 37..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:53 Download gff for
FMO04781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 80..795 | 37..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:13 Download gff for
FMO04781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 112..827 | 37..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:13 Download gff for
FMO04781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3327351..3327553 | 37..240 | 99 | -> | Plus |
| 3L | 3327860..3328183 | 241..564 | 100 | -> | Plus |
| 3L | 3328251..3328439 | 565..753 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:44 Download gff for
FMO04781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3327351..3327553 | 37..240 | 99 | -> | Plus |
| arm_3L | 3327860..3328183 | 241..564 | 100 | -> | Plus |
| arm_3L | 3328251..3328439 | 565..753 | 100 | | Plus |
