FMO04787.5prime Sequence
1201 bp (1046 high quality bases) assembled on 2008-08-08
> FMO04787.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGCAAATG
GCGATACCAGCGCCTGCAATGGGTATTCGGACAAGCAGCGGAAGGATGTG
CGCGTCTGGTGCGATGGATGCTATGATATGGTACACTTCGGACATGCCAA
TTCTCTGCGACAAGCCAAGGCTCTTGGCGATAAGGTAATTGTGGGCATTC
ACACCGACGAGGAGATCACCAAGCACAAGGGACCACCGGTCTTCACCGAG
GAGGAGCGCGTCAAGATGGTCAAGGGCATCAAATGGGTGGATGAGGTGGT
GCTCGGTGCTCCGTATGTGACCACACTGGATGTGCTCGACCAGAACAACT
GTGATTTCTGTGTGCATGGAGATGACATTACAATGACAGCCGAAGGAGTG
GACACATATCATTTGGTCAAATCAGCCAATCGCTACAAGGAAGTGAAACG
CACAGCTGGAGTCTCGACCACTGACCTTGTGGGCCGCATGTTGCTCCTGA
CACGCAACCACTTCCGTCAAGGATCCGCGGAATATGATATCGAGAAAGAA
GGTTCTTCGAACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGACCGG
TTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGTGATG
GAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGCCTTC
GATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGAAACT
GGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAACTCCT
ACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCTCAGT
GTTTTGGCCTGCAAGTTTGTCAATGAGTAGTAATCGGAGCTCCCTACTGT
GTCACTGAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGTCATGGA
CGCACACCCATTGCGCTTGAGATGGCAGATCGATCCATATGCCGTTCCCA
AGACGCGAGCCATCTTTGAGCTGATCGATCGCACGAGATGACACGGAGCG
CATCGTGAGCGCATCATCTCCGCACCGACTGATTATGAGGGTCGCAATCA
AGCAAGAAAGAAGATTCGAGGCTGAGTATCCACGCCAAAACAGAACCTAA
GGCCCGCAGCTTCTGAACCTCTTTGCTTGGGCGCGCGGTCCGAGTTAGTG
T
FMO04787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 2174 | CG5547-RD | 429..1501 | 38..1100 | 5050 | 98.7 | Plus |
| Pect-RC | 2153 | CG5547-RC | 429..1480 | 38..1100 | 4725 | 96.7 | Plus |
| Pect-RE | 2144 | CG5547-RE | 429..942 | 38..551 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13208109..13208360 | 120..371 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 680..865 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 13209909..13210155 | 864..1100 | 685 | 93.5 | Plus |
| 2L | 23513712 | 2L | 13209470..13209601 | 550..681 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 13208665..13208779 | 439..553 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 13204190..13204272 | 38..120 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 13208419..13208488 | 370..439 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:47 has no hits.
FMO04787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:58 Download gff for
FMO04787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 418..1517 | 28..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:55 Download gff for
FMO04787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 412..1511 | 28..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:20 Download gff for
FMO04787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 418..1517 | 28..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:20 Download gff for
FMO04787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13204179..13204272 | 28..120 | 96 | -> | Plus |
| 2L | 13208110..13208360 | 121..371 | 100 | -> | Plus |
| 2L | 13208421..13208487 | 372..438 | 100 | -> | Plus |
| 2L | 13208665..13208777 | 439..551 | 100 | -> | Plus |
| 2L | 13209472..13209599 | 552..679 | 100 | -> | Plus |
| 2L | 13209660..13209845 | 680..865 | 100 | -> | Plus |
| 2L | 13209911..13210171 | 866..1113 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:58 Download gff for
FMO04787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13204179..13204272 | 28..120 | 96 | -> | Plus |
| arm_2L | 13208110..13208360 | 121..371 | 100 | -> | Plus |
| arm_2L | 13208421..13208487 | 372..438 | 100 | -> | Plus |
| arm_2L | 13208665..13208777 | 439..551 | 100 | -> | Plus |
| arm_2L | 13209472..13209599 | 552..679 | 100 | -> | Plus |
| arm_2L | 13209660..13209845 | 680..865 | 100 | -> | Plus |
| arm_2L | 13209911..13210171 | 866..1113 | 93 | | Plus |
