FMO04788.5prime Sequence
571 bp (571 high quality bases) assembled on 2008-08-08
> FMO04788.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGAAGAAA
AGAAGAATGGCGATGAATTAAACGACTTGCTGGACAGTGCTCTCCAGGAT
TTCGATAAAAGTGGTGCCGGTGACCAAAAGGAGCCGTCCGCATCATCGGA
TGTGGCGACCAACGCTGGACCTGAGGGCTCCGAGGATCCAGATGCGTTTT
TCATTGAGCAGGCCAAGGTGCTGGCCGATCGCATGAACACGCTCTTCGGA
GGTCCGGACACGCCCAGTGGCGATATTCCGCCGCTGCCCCAGGATCCCGA
CCAGATCATGGCCGGTTTCAAAAAGATGGCCGAAGCGGCAGCGCTCACCT
TGAGCGGCGAAAATTCGGCCACCGACGAGGATGTCTCCAAGTATTCTGAT
AGCATTTCCCAGGCTCTCAAGGGTCTGCAAGAGGGCTCCGAGAACCTGGC
TGCTCCCGCCTCGGAGAACGACATAGCCAGCATGTTTGGTTCACTGAATC
TTGAAGGGGTATGCATCCTGAAAATGAAATATGAATTCTCCTTGCTCAAT
CATGCAAGCTTTCTAGACCAT
FMO04788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex19-RC | 1596 | CG5325-RC | 480..951 | 38..509 | 2360 | 100 | Plus |
| Pex19-RA | 1217 | CG5325-RA | 101..572 | 38..509 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12094173..12094526 | 200..553 | 1755 | 99.7 | Plus |
| 2L | 23513712 | 2L | 12093994..12094111 | 87..204 | 590 | 100 | Plus |
| 2L | 23513712 | 2L | 12093862..12093913 | 38..89 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:16 has no hits.
FMO04788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:06 Download gff for
FMO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 101..575 | 38..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:58 Download gff for
FMO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5325-RB | 92..610 | 38..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:53 Download gff for
FMO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 101..575 | 38..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:53 Download gff for
FMO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12093858..12093910 | 34..86 | 96 | -> | Plus |
| 2L | 12093994..12094111 | 87..204 | 100 | -> | Plus |
| 2L | 12094178..12094529 | 205..557 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:06 Download gff for
FMO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12093858..12093910 | 34..86 | 96 | -> | Plus |
| arm_2L | 12093994..12094111 | 87..204 | 100 | -> | Plus |
| arm_2L | 12094178..12094529 | 205..557 | 99 | | Plus |
