FMO04792.5prime Sequence
792 bp (792 high quality bases) assembled on 2008-08-08
> FMO04792.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGACCAA
GATACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGG
TGGACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTG
GTGTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGA
TGACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCGGCGGTCAAAG
AGCTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCC
ACTACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTG
TCAGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAA
AGCTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCT
ACGCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGG
AAAGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCC
AGTTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCA
ATCCCAAGTGCCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGC
AGCTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTG
CTCTCTTATTCGTTGGCAAAAAGGTTGCCAAAATATTCAGTTCAGAGCCT
GCGAAAACAAAAAATAAGTCGAAAGCAAGCTTTCTAGACCAT
FMO04792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11790-RB | 1116 | CG11790-RB | 356..1092 | 38..774 | 3670 | 99.9 | Plus |
| CG11790-RA | 1010 | CG11790-RA | 250..986 | 38..774 | 3670 | 99.9 | Plus |
| CG11790-RC | 1040 | CG11790-RC | 250..826 | 38..614 | 2870 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25048061..25048349 | 38..326 | 1430 | 99.7 | Plus |
| 3R | 32079331 | 3R | 25048442..25048603 | 327..488 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 25049272..25049431 | 615..774 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 25048665..25048790 | 489..614 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:17 has no hits.
FMO04792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:26 Download gff for
FMO04792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RA | 243..993 | 29..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:47 Download gff for
FMO04792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RB | 355..1105 | 29..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:43 Download gff for
FMO04792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RA | 243..993 | 29..781 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:43 Download gff for
FMO04792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25048054..25048349 | 29..326 | 98 | -> | Plus |
| 3R | 25048442..25048603 | 327..488 | 100 | -> | Plus |
| 3R | 25048665..25048790 | 489..614 | 100 | -> | Plus |
| 3R | 25049272..25049430 | 615..773 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:26 Download gff for
FMO04792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20873776..20874071 | 29..326 | 98 | -> | Plus |
| arm_3R | 20874164..20874325 | 327..488 | 100 | -> | Plus |
| arm_3R | 20874387..20874512 | 489..614 | 100 | -> | Plus |
| arm_3R | 20874994..20875152 | 615..773 | 100 | -> | Plus |
