FMO04794.5prime Sequence
803 bp (803 high quality bases) assembled on 2008-08-08
> FMO04794.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGGGATCG
ACGCTGGACAAAATCTCCGCCTTCCTCGGCGAGCTCATCGGCACCGGCAT
CCTGGTCTTCCTGGGCTGCATGGGTTGCGTGAAGACGGACCTCTTTCCCA
ACAACCATCTGCAGATTGTGCTGAACTTCGGCTTCGCCGTCCTCATCGCC
ATCCAGTGCTTTGGCTGCGTCTCCGGTGCCCATCTGAATCCCGCCGTGAC
CGTGGCCGCCTACATCTACGAGATGGTCACCCTGCGCATGGCATTTGCCT
ACTTCGCCGCCCAGATGCTGGGCGCCTTCATCGGCTACGGCCTGCTCATG
GTCCTGCTTCCCTCGCCCACACTTACGGTGGGCGCTGGGCTCTGCGTGAC
CTTGCCCCACACCAGCGTAACCACGGGCCAGGCCCTCGGCATCGAGTTCG
TAATCACCTCCATCCTGGTCATCGTCTGCTGCGGAGTGTGGGATCCGCGC
AACTCCAAGTTCCATGACTCCGTGGGCATTCGATTTGGCCTGGCCATCGC
CTGTCTCGCCTGCGCTGCCGGTCCCTTCACCGGCGGCAGCATGAACCCGG
CCAGGTCGTTCGCCCCCGCCCTGTGGAACAAGCACTTCGAGAGCAACTGG
ATCTACTGGCTGGCCCCGCTGAGCTCCTCCGCCATCACCGCCTACGCCTA
CAAGGTCGTCTTCCGCCGCGAGGTGGTTGAGGCGGAGATCACCTCCAATG
AGAAGCTGCGGCAACTGGAGGACGTCCAGCTGTCGGCAAGCTTTCTAGAC
CAT
FMO04794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RF | 1271 | CG4019-RF | 281..1027 | 39..785 | 3735 | 100 | Plus |
| CG4019-RE | 1183 | CG4019-RE | 193..939 | 39..785 | 3735 | 100 | Plus |
| CG4019-RC | 1138 | CG4019-RC | 148..894 | 39..785 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23608131..23608662 | 570..39 | 2660 | 100 | Minus |
| 2R | 25286936 | 2R | 23607836..23608051 | 785..570 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 23604625..23604800 | 346..171 | 400 | 81.8 | Minus |
| 2R | 25286936 | 2R | 23606358..23606443 | 261..176 | 205 | 82.6 | Minus |
Blast to na_te.dros performed 2014-11-28 20:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 4100..4150 | 793..741 | 116 | 71.7 | Minus |
FMO04794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:47 Download gff for
FMO04794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RC | 140..898 | 30..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:44 Download gff for
FMO04794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RB | 90..848 | 30..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:30 Download gff for
FMO04794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RC | 140..898 | 30..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:30 Download gff for
FMO04794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23607832..23608051 | 570..790 | 99 | <- | Minus |
| 2R | 23608132..23608670 | 30..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:47 Download gff for
FMO04794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19495355..19495574 | 570..790 | 99 | <- | Minus |
| arm_2R | 19495655..19496193 | 30..569 | 99 | | Minus |
