FMO04801.5prime Sequence
867 bp (867 high quality bases) assembled on 2008-08-08
> FMO04801.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGGATACATTTGACG
TTTCTGATAGGAACAGCTGGTACTTTGGTCCCATGTCTAGACAGGATGCT
ACTGAAGTTTTGATGAACGAACGCGAGCGGGGAGTGTTTTTAGTCCGTGA
TAGTAACTCGATAGCAGGGGATTATGTACTTTGTGTAAGAGAAGATACAA
AAGTTAGCAACTACATCATTAACAAAGTTCAACAACAGGATCAAATCGTT
TACCGCATTGGGGATCAGTCTTTTGACAATCTACCGAAACTCTTAACTTT
TTACACTCTTCATTATTTGGATACAACCCCTTTAAAACGGCCTGCGTGTA
GAAGGGTGGAAAAAGTAATAGGAAAGTTCGATTTCGTTGGCAGCGATCAA
GATGATTTACCTTTTCAAAGAGGTGAAGTTTTAACAATAGTTCGAAAAGA
CGAGGATCAATGGTGGACTGCGCGTAACTCCTCGGGGAAAATTGGTCAAA
TACCGGTTCCCTATATACAACAGTATGACGATTATATGGATGAAGATGCT
ATTGATAAAAACGAACCTTCCATTTCGGGATCTAGCAATGTATTTGAAAG
TACTCTTAAAAAGGACAGATTTAAATCGAAAACTACCTGCATACGCCCGC
GTAAAACAGTCAAGGGTCCCTAAACGCATACGATAAGACTGCATTAAAAT
TGGAAATAGGTGACATTATTAAAGTCACTAAAACAAACATTAATGGGCAA
TGGGAGGGAGAATTAAATGGAAAAAATGGTCATTTTCCCTTCACGCACGT
TGAATTTGTCGATGATTGTGATTTAAGCAAAAACTCCACAGAAATATGCG
CAAGCTTTCTAGACCAT
FMO04801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crk-RA | 1197 | CG1587-RA | 232..1044 | 35..849 | 4025 | 99.8 | Plus |
| Crk-RC | 1122 | CG1587-RC | 157..969 | 35..849 | 4025 | 99.8 | Plus |
| Crk-RE | 1173 | CG1587-RE | 262..1020 | 89..849 | 3755 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 212791..213012 | 627..849 | 1065 | 99.6 | Plus |
| 4 | 1348131 | 4 | 211588..211795 | 188..395 | 1040 | 100 | Plus |
| 4 | 1348131 | 4 | 211854..211982 | 395..523 | 645 | 100 | Plus |
| 4 | 1348131 | 4 | 210556..210680 | 65..189 | 625 | 100 | Plus |
| 4 | 1348131 | 4 | 212625..212729 | 521..626 | 480 | 99.1 | Plus |
| 4 | 1348131 | 4 | 215957..216052 | 188..283 | 435 | 96.9 | Plus |
| 4 | 1348131 | 4 | 216168..216226 | 395..453 | 280 | 98.3 | Plus |
| 4 | 1348131 | 4 | 216051..216111 | 333..393 | 275 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:17 has no hits.
FMO04801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:19 Download gff for
FMO04801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crk-RC | 154..972 | 32..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:32 Download gff for
FMO04801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crk-RA | 158..976 | 32..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:54 Download gff for
FMO04801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crk-RC | 154..972 | 32..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:54 Download gff for
FMO04801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 212791..213015 | 627..853 | 98 | | Plus |
| 4 | 211854..211982 | 395..523 | 100 | -> | Plus |
| 4 | 212628..212729 | 524..626 | 99 | -> | Plus |
| 4 | 210452..210486 | 32..66 | 97 | -> | Plus |
| 4 | 210558..210680 | 67..189 | 100 | -> | Plus |
| 4 | 211590..211794 | 190..394 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:19 Download gff for
FMO04801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 231078..231112 | 32..66 | 97 | -> | Plus |
| arm_4 | 231184..231306 | 67..189 | 100 | -> | Plus |
| arm_4 | 232216..232420 | 190..394 | 100 | -> | Plus |
| arm_4 | 232480..232608 | 395..523 | 100 | -> | Plus |
| arm_4 | 233254..233355 | 524..626 | 99 | -> | Plus |
| arm_4 | 233417..233641 | 627..853 | 98 | | Plus |
