FMO04802.5prime Sequence
971 bp (971 high quality bases) assembled on 2008-08-08
> FMO04802.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATAAAGATAC
AGGGGATAAGGACTCCGCCCCCGAGACCAGCGCTTCGCCAGCAACTGGAT
GGAGCGACAAGCTGACGGATCTGGTCGCCTGGTTCGAGGCCAATCCCAAT
CTGCCCGAGAAGATCGAACCAATAGTTATGCTACGATTCCTCAAGTGCAC
GGCTTTTGATGTGGAACGCACCAAGGCCCTGGCGGAGCTAAATTATTGTA
TGCGCAATAAGAGCCCACATCTGTTCATGGATCGCAACATGGAGGACGAG
ATGACCGCCGAGGGCCTGAGGGTTTCGGACCTTTTGATATTACCCGGAGT
CACTCCCCAGGGAAATAAGCTCATCTTCTTCCGCATGGCCGATCTGGATC
CACGAACGCGGAATTCTGTCGAGGAGACCAAAATCTTTGTCATGATGAGT
GATGCACGATTCACAAAGCCGGATGTAGAGCGAGAAACAGGAAGCGGAGC
TGATTACGTACTAGACGAAGCGGACATTGCCGAGGGCGATGTTCAGATTG
TGGACATTGGGGGCTACACCCTACGCCACCTGGCCTACGTGTCCATATTC
GTGCTGCGTGTTTACATGAAGTTCCTGCAGGAAGCCTATCCCTCGCGACT
CCAGGCCATGCATGTCATCAACTGCCCCACTTACCTGGACAAGCTCATAT
CCATGATGTCGCCCTTCCTAAGGGAGGAAGTCCGCAACATGATCCGGTAC
CACACAGAGGGTATGGATAGCCTTTACAAAGAGTGCCCAGGGACATGTTG
CCGAACGAGTACGGCGGCAAGGCGGGCACTGTAGCGGAACTCAAGGCGAA
AGGCATTCAGTCCATCAGGGACACGCGGCTTATCTCAGCGACGAGCGGTA
CTGGAAGGTGGCCGCTCAGAGCAAGAGTCGGTGTCCTGGTTCGCAAGCTT
TCTAGACCATTCGTTTGGCGC
FMO04802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3091-RC | 1286 | CG3091-RC | 111..1019 | 37..942 | 4470 | 99.7 | Plus |
| CG3091-RA | 1219 | CG3091-RA | 44..952 | 37..942 | 4470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2252916..2253249 | 741..408 | 1670 | 100 | Minus |
| X | 23542271 | X | 2253450..2253615 | 327..162 | 815 | 99.4 | Minus |
| X | 23542271 | X | 2253958..2254087 | 166..37 | 650 | 100 | Minus |
| X | 23542271 | X | 2252728..2252861 | 873..741 | 620 | 99.3 | Minus |
| X | 23542271 | X | 2253317..2253398 | 408..327 | 410 | 100 | Minus |
| X | 23542271 | X | 2252609..2252665 | 933..877 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:18 has no hits.
FMO04802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:22 Download gff for
FMO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3091-RA | 39..952 | 29..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:47 Download gff for
FMO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3091-RA | 39..952 | 29..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:32 Download gff for
FMO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3091-RA | 39..952 | 29..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:32 Download gff for
FMO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2252599..2252665 | 877..942 | 98 | <- | Minus |
| X | 2252724..2252860 | 742..876 | 98 | <- | Minus |
| X | 2252916..2253248 | 409..741 | 100 | <- | Minus |
| X | 2253317..2253398 | 327..408 | 100 | <- | Minus |
| X | 2253451..2253610 | 167..326 | 100 | <- | Minus |
| X | 2253958..2254092 | 29..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:22 Download gff for
FMO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2147350..2147431 | 327..408 | 100 | <- | Minus |
| arm_X | 2147991..2148125 | 29..166 | 97 | | Minus |
| arm_X | 2147484..2147643 | 167..326 | 100 | <- | Minus |
| arm_X | 2146632..2146698 | 877..942 | 98 | <- | Minus |
| arm_X | 2146757..2146893 | 742..876 | 98 | <- | Minus |
| arm_X | 2146949..2147281 | 409..741 | 100 | <- | Minus |
