FMO04804.5prime Sequence
832 bp (832 high quality bases) assembled on 2008-08-08
> FMO04804.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAAACGTTT
TGGATGTCATGTCGATGCAGCAGCACGTGGAGTTGAACAAGGCGCAGACC
ATGAAGCCCATCGACTATCGCAAAATGAACAAACCCGGCGTGGTGCCGAT
GTACATCTTTGAGTGCGCTGCCAAGTTGAAAATGAAACCGCTGACGGCGG
CCTGTGCGGCCATAGTGTTCCATCGCTTCTTCCGCGAGGTCAAGGCCAGC
GACTACGATGAGTTCCTCATTGCCGCGGGCTCGCTGTACTTGGCTGGCAA
AATTAAGGAAGACGAAAGTGTCAAGATACGCGATGTCATCAACGTGGCAT
ACTGCACCCTTAACCGGGGCAATGATCCAGTCGACCTGAACGATGAGTAC
TGGTCGATGCGGGATGCCATTGTCCAGGCTGAGCTGCTCATCACGCGCAC
CCTGTGCTTCGATCTCAACATAGATCTGGCCCACAAGTACTTACTCCACT
ACATGAAGACCCTACAAGACTGGGTGGGCACTGAGGTGTGGAACTCGGTG
CCCATTGCCAAGGCAGCCGCCTCGTATCTGCAAGACTTTCACCACAGCGC
CAATATCCTCAAGTACAAGCCCACCCATGTGGCCATTGGGTGCCTGTCGC
TGGCCCTCCAGACCTACGGCATCCAGGTGCCGCTAACCGACGAGTCCGAC
GAATCCGCCATGTGGTACAAGCCCTTGGTCAAGGACTTCACCCGAGAGAA
CCAGTGGGAGATCATCGAGAACGTGATCGAGGTCTACAAGAACGAGGGCT
TCCTGAATGCCACCGCAAGCTTTCTAGACCAT
FMO04804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| koko-RE | 1122 | CG44010-RE | 61..838 | 37..814 | 3890 | 100 | Plus |
| koko-RD | 1177 | CG44010-RD | 116..893 | 37..814 | 3890 | 100 | Plus |
| koko-RC | 1247 | CG44010-RC | 186..963 | 37..814 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18403894..18404442 | 266..814 | 2745 | 100 | Plus |
| 3R | 32079331 | 3R | 18403688..18403833 | 120..265 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 18403539..18403622 | 37..120 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:44 has no hits.
FMO04804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:01 Download gff for
FMO04804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| koko-RC | 178..966 | 31..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:57 Download gff for
FMO04804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| koko-RA | 822..1610 | 31..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:35 Download gff for
FMO04804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| koko-RC | 178..966 | 31..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:35 Download gff for
FMO04804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18403531..18403622 | 31..120 | 96 | -> | Plus |
| 3R | 18403689..18403833 | 121..265 | 100 | -> | Plus |
| 3R | 18403894..18404447 | 266..819 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:01 Download gff for
FMO04804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14229253..14229344 | 31..120 | 96 | -> | Plus |
| arm_3R | 14229411..14229555 | 121..265 | 100 | -> | Plus |
| arm_3R | 14229616..14230169 | 266..819 | 99 | -> | Plus |
