FMO04805.5prime Sequence
752 bp (752 high quality bases) assembled on 2008-08-08
> FMO04805.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAGCACTG
GGATTAGTTCTGCTATCGATGATGGGCTATACTCAGCACATGCAGCAGGC
GAATCTGGGCGACGGTGTGGCCACCGCCCGCCTGCTGTCCCGATCCGACT
GGGGTGCCCGGCTGCCCAAGTCCGTGGAGCACTTCCAGGGTCCCGCGCCC
TACGTCATCATCCATCACTCGTACATGCCGGCCGTGTGCTACTCCACTCC
GGACTGCATGAAGAGCATGCGGGACATGCAGGACTTCCATCAGCTGGAGC
GCGGATGGAACGATATTGGTTATAGCTTTGGCATCGGCGGCGATGGCATG
ATTTACACCGGCAGGGGATTCAATGTCATCGGAGCTCATGCACCCAAGTA
CAATGACAAGAGCGTGGGCATTGTGCTGATCGGAGATTGGAGAACCGAAC
TGCCGCCCAAGCAGATGCTGGATGCGGCCAAGAACCTGATCGCCTTTGGC
GTTTTCAAGGGCTACATTGACCCTGCCTACAAGCTGCTGGGCCACCGACA
GGTGCGGGATACCGAGTGTCCTGGCGGCCGCCTGTTCGCCGAGATCTCCA
GCTGGCCGCACTTTACCCACATAAACGACACCGAAGGCGTCAGCAGCACC
ACGGCGCCCGTCGTGCCCCACGTCCATCCACAGGCGGCAGCACCACAAAA
GCCGCACCAATCCCCGCCAGCTGCGCCCAAGGTCGCAAGCTTTCTAGACC
AT
FMO04805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LB-RC | 1255 | CG14704-RC | 397..1094 | 37..734 | 3475 | 99.9 | Plus |
| PGRP-LB-RD | 926 | CG14704-RD | 106..765 | 75..734 | 3285 | 99.8 | Plus |
| PGRP-LB-RF | 1234 | CG14704-RF | 415..1073 | 76..734 | 3280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11453452..11453821 | 444..75 | 1835 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11453010..11453299 | 734..445 | 1450 | 100 | Minus |
| 3R | 32079331 | 3R | 11457585..11457624 | 76..37 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:18 has no hits.
FMO04805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:59 Download gff for
FMO04805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RC | 392..1100 | 31..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:36 Download gff for
FMO04805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RC | 392..1100 | 31..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:00 Download gff for
FMO04805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RC | 392..1100 | 31..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:00 Download gff for
FMO04805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11453004..11453299 | 445..741 | 98 | <- | Minus |
| 3R | 11453452..11453820 | 76..444 | 99 | <- | Minus |
| 3R | 11457586..11457629 | 31..75 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:59 Download gff for
FMO04805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7278726..7279021 | 445..741 | 98 | <- | Minus |
| arm_3R | 7279174..7279542 | 76..444 | 99 | <- | Minus |
| arm_3R | 7283308..7283351 | 31..75 | 95 | | Minus |
