FMO04806.5prime Sequence
798 bp (798 high quality bases) assembled on 2008-08-08
> FMO04806.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTGAGAATTT
TCGAGGTATTTTTCGGAAACGGCGTCGCTGCGAGTCGGACACAACACCGC
CGCCACCGCCGCCGCAACCCGCCCAGGAGGCGGAGATAATAAACCGATAT
CCGGAAGATATAGAAGCCGATACGCCCGAGTCCAATGATGGCTTTGACGC
CTCCTGGACCGAAGGCTCTTTTCACAGCCCACATTCAGATAGACCATTTA
ACGCCAGCGAGAGATTTGTCACCATACTGGATAGTTTGGATGCACGTGTG
GAGAAGCTGCGCAAGGATGCACTCAACCTGCAGGAGAAGAAAGACTACCT
TCTGATGTCCATGGATCTGATCAAGAGCAACGAAATGATGCAGAACATGA
GCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAACGGGTGAGCTCT
CGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCGGGACAACTCTCA
GGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACAGCATGATCAAGA
TGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTTTACTTAAACGCC
TGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGACACCGTGCCCGA
GGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCGTTTTGCTTGGCT
GCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTCCAGGCCTTAATG
GCTTATCTGAATAAGCAAACTGTTAGCCATGCAAGCTTTCTAGACCAT
FMO04806.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7945-RB | 1275 | CG7945-RB | 421..1164 | 37..780 | 3720 | 100 | Plus |
| CG7945-RA | 1451 | CG7945-RA | 801..1340 | 241..780 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15521822..15522197 | 780..405 | 1880 | 100 | Minus |
| 3L | 28110227 | 3L | 15523512..15523717 | 242..37 | 1030 | 100 | Minus |
| 3L | 28110227 | 3L | 15522360..15522504 | 406..262 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:43 has no hits.
FMO04806.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:27 Download gff for
FMO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 409..1169 | 25..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:51 Download gff for
FMO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 371..1131 | 25..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:46 Download gff for
FMO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 409..1169 | 25..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:46 Download gff for
FMO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15521817..15522195 | 407..788 | 98 | <- | Minus |
| 3L | 15522360..15522502 | 264..406 | 100 | <- | Minus |
| 3L | 15522560..15522580 | 243..263 | 100 | <- | Minus |
| 3L | 15523512..15523723 | 31..242 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:27 Download gff for
FMO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15514917..15515295 | 407..788 | 98 | <- | Minus |
| arm_3L | 15515460..15515602 | 264..406 | 100 | <- | Minus |
| arm_3L | 15515660..15515680 | 243..263 | 100 | <- | Minus |
| arm_3L | 15516612..15516823 | 31..242 | 98 | <- | Minus |
