FMO04809.5prime Sequence
793 bp (673 high quality bases) assembled on 2008-08-08
> FMO04809.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGCCACGGGGAAAACGCC
GAGCTGCTATACTATTAGCGACAACATGGATCATGGTCAACCGAAGAGGG
CCCGAACCAGCCACCCCAGCATACCCACACAACAGAGCAGCACACGCCAT
ATCAGATTGGAAGATGGCTTCAGTCAAAAGCGTTGCATGGCCTGGTTCCA
GGAGTACGCAACACCAGATGAACCGGAGACATTGGGTCCCGATGGCATGG
AAAAATTCTGCGAGGATATCGGCGTGGAGCCCGAAAATATTGTGATGCTG
GTGCTGGCCTACAAAATGGGCGCCACCCAGATGGGCTTCTTCAGCCAGCA
GGAGTGGCTAAAGGGCCTCACAGAACTCGACTGCGATTCGGCAGCGAAAA
TGGTTGTGAAATTGGACTATCTGCGCAGCATACTCAACGATCCCAACTCC
TTTAAAAGCATCTACAGATACGCCTACGACTTTGCCAAGGACTCGGACCA
ACGGTGTATGGATATACTCACTGCCAAAGCCATGCTTCAACTACTTTAGG
GCAAACATTGGCCTCTGTATCCACAGTTCGCACAGTTTCTAGAGCAATCA
AAGTACAAGGCGATCAACAAAGATCAGTGGTGTAATATTCTCGAGTTCTC
GCGCACCATTAACATTGATCTATCACACTACGATATCGACGGAGCTTGGC
CCGTCATGCTGGATGAGTTTGTTGAATGGCTGCGCCTGCAGCGGAGTCAG
GTCACCTCCACAACCCGGATCTAGCGCAAGCTTTCTAGACCAT
FMO04809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6597-RE | 1289 | CG6597-RE | 174..918 | 31..775 | 3545 | 98.5 | Plus |
| CG6597-RB | 1947 | CG6597-RB | 515..1259 | 31..775 | 3545 | 98.5 | Plus |
| CG6597-RA | 1295 | CG6597-RA | 180..924 | 31..775 | 3545 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20308093..20308348 | 235..490 | 1265 | 99.6 | Plus |
| 3L | 28110227 | 3L | 20308407..20308617 | 488..698 | 1010 | 98.6 | Plus |
| 3L | 28110227 | 3L | 20303232..20303344 | 31..142 | 470 | 96.5 | Plus |
| 3L | 28110227 | 3L | 20307831..20307924 | 144..237 | 455 | 98.9 | Plus |
| 3L | 28110227 | 3L | 20308747..20308814 | 698..765 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:05 has no hits.
FMO04809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:56 Download gff for
FMO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RA | 174..924 | 22..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:37 Download gff for
FMO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RB | 467..1217 | 22..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:52 Download gff for
FMO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RA | 174..924 | 22..775 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:52 Download gff for
FMO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20308747..20308823 | 698..775 | 98 | | Plus |
| 3L | 20303231..20303345 | 30..143 | 94 | -> | Plus |
| 3L | 20307831..20307922 | 144..235 | 98 | -> | Plus |
| 3L | 20308094..20308347 | 236..489 | 99 | -> | Plus |
| 3L | 20308409..20308616 | 490..697 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:56 Download gff for
FMO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20296331..20296445 | 30..143 | 94 | -> | Plus |
| arm_3L | 20300931..20301022 | 144..235 | 98 | -> | Plus |
| arm_3L | 20301194..20301447 | 236..489 | 99 | -> | Plus |
| arm_3L | 20301509..20301716 | 490..697 | 98 | -> | Plus |
| arm_3L | 20301847..20301923 | 698..775 | 98 | | Plus |
