FMO04810.5prime Sequence
1067 bp (1030 high quality bases) assembled on 2008-08-08
> FMO04810.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGCTGCGTCTA
GCACTTTCCACCGCCCGTCCAGCCGGGGCTATCAAGATCCTGGCCCAGTC
TCCGGCCCAGCTGTTCCGGGCCAATGCCAATCCCAATCTGAATCTCTCCA
CGGTGCGCACCTACGCCCGCAGGGTGGTTCGCACCCGTGAGCCCGTCGAA
GAGATGCGTGCTCCCTCGCTGAAGGAGAAACTGATGGGTCCGCCAAGTGC
CAATGCATACTCCATGGGCAAGGGCGCTGCCGCCGGAGCAGCCGCCGTGG
GATTGGGCGCCCTGTGCTACTACGGCGTGGGATTGGGAAAACAAACCAGC
ATCGCGGATAATGCCATCATGTGGCCCCAGTTTGTGCGCGATCGTATCCA
GAGCACCTATGCCTTTTTCGGTGGCTCTTGCGTTCTCACCGCGGCCGCAG
CAGCAGCCACCTTCCGTTCGCACCGTCTCCTGGAGCTGGCCTCGCGTGGC
GGCATCTTGGCGACCATTGCTTCGCTGGCGCTGGTCATTGGTAGTGGAGC
AGTTGCCCGCTCGATTGAGTACCAGCCGGGTCTGGGAGCCAAGCATCTGG
CCTGGGCGGTGCACTGCGCCATTCTGGGCGCCGTGATCGCACCCATTTGC
TTCATGGGCGGACCGATTTTGACGCGCGCCGCTCTCTACACGGGCGGCAT
TGTTGGTGGCTTGTCCACGATCGCCGCGTGTGCACCCAGCGATAAGTTCC
TCTACATGGGCGGCCCACTGGCCATTGGCTTGGGCGTGGTGTTCGCCTCC
TCGCTGGCATCCATGTGGCTGCCGCCCACCACGGCGCTGGGCGCAGTCTG
GCCTCCATGTCCCTATATGGCGGCCTCGTCCTCTTCAGTGGCTTCCTGCT
CTATGACACTCAGCGCATGGTCCGTCGCGCTGAGTCTATCCCCAGTACAG
CTACACTCCCTACGATCCAATCAACGCCTCATGTCGATCTACATGGACGT
GCTGACATATCATCCGCATCGTAACATTCTGGGTGGTGGTCAGCGCAGAA
GCAAGCTTTCTAGACAA
FMO04810.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2076-RB | 1491 | CG2076-RB | 370..1388 | 36..1048 | 4915 | 99.2 | Plus |
| CG2076-RA | 1319 | CG2076-RA | 198..1216 | 36..1048 | 4915 | 99.2 | Plus |
| CG1287-RA | 1426 | CG1287-RA | 740..1140 | 573..971 | 545 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11091290..11091627 | 509..846 | 1690 | 100 | Plus |
| X | 23542271 | X | 11090579..11090798 | 36..255 | 1100 | 100 | Plus |
| X | 23542271 | X | 11091051..11091193 | 368..510 | 715 | 100 | Plus |
| X | 23542271 | X | 11091725..11091857 | 846..977 | 615 | 99.2 | Plus |
| X | 23542271 | X | 11090865..11090977 | 255..367 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 7501381..7501637 | 829..573 | 505 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:42 has no hits.
FMO04810.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:37 Download gff for
FMO04810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2076-RA | 191..1225 | 28..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:55 Download gff for
FMO04810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2076-RA | 192..1226 | 28..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:49 Download gff for
FMO04810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2076-RA | 191..1225 | 28..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:49 Download gff for
FMO04810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11090572..11090798 | 28..255 | 98 | -> | Plus |
| X | 11090866..11090977 | 256..367 | 100 | -> | Plus |
| X | 11091051..11091192 | 368..509 | 100 | -> | Plus |
| X | 11091291..11091627 | 510..845 | 99 | -> | Plus |
| X | 11091725..11091857 | 846..977 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:37 Download gff for
FMO04810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10984605..10984831 | 28..255 | 98 | -> | Plus |
| arm_X | 10984899..10985010 | 256..367 | 100 | -> | Plus |
| arm_X | 10985084..10985225 | 368..509 | 100 | -> | Plus |
| arm_X | 10985324..10985660 | 510..845 | 99 | -> | Plus |
| arm_X | 10985758..10985890 | 846..977 | 99 | -> | Plus |
