Clone FMO04811 Report

Search the DGRC for FMO04811

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:48
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG2812-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04811.5prime Sequence

1160 bp (1038 high quality bases) assembled on 2008-08-08

> FMO04811.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATCCGG
AATCGAGGGACCTGGATTTGAGAAAGGGCGATGTCGAGAGGCCGCACTTC
GAGGCGGTTACCACACTGTCCGACTCGCAGGCGATCCGGAGCGTCGACTT
TCATCCGAATGGAAAGTTGTACGCGGTGGGCTCCAACTCCAAGACCTTCC
GCATCTGCCAGTACCCCGCGCTGTCCAAGCTGAGACATGGACACCAGGCA
GCGGTGTATCCCCCGTCCGTTCTCTGCAAGCGCACGAAACACCATCGGGG
CTCCATATACTGCACCTGCTGGTCACGGGATGGGGAGCTAATTGCCACCG
GATCGAACGACAAGACCATCAAGTACATGCGCTTCAACAACGACACCAAC
CAGCTGGTGGGACACGAGATGGAGCTGAACATGCACGACGGCACGGTGCG
GGACATGTGCTTCCTGGACGACTCGTCCACCAAGTCCCGGCTGCTGGCGA
GCGGCGGCGCCGGGGACTGCAAGATCTACATCACAGACTGCGGAACCGGC
ACTCCCTTCCAGGCCTACAGTGGTCATACTGGCCACATCCTGTCCCTCTA
CAGCTGGAACAACGCGATGTTCGTGTCGGGATCGCAGGATCAAACGATAC
GTTTCTGGGATCTGCGAGTGAATGTCTCTGTGAATACGCTGGATAACGAT
CGAAAGGATGGTGGTCTGGAGAGCTCCGCTGTAACCGCGGTCTGTGTAGA
TCCCACCGGCAGGCTGCTAGTCTCTGGGCACGCTGACAGCTCCTGTACTC
TGTACGACATCCGTGGCAACCGGCCCATTCAGCGCTTCTATCCGCACACC
GCTGAAATAAGGTGCGTCCGATTCTCCCCATCCGCCTACTACATGCTGAC
GTGCAGCTACGACAACTCGATCCGGCTGACGGACCTGCAAGGCGACCTGT
CCACGAGCTGTCCTCCGTGGTGGTGCGGAGCCACAAGACAGGCCATCACC
ATCCGATGGCATCCGACCGAGTTCTCTCATCTCACGTCGGCGACAAGACG
CCATCCTCTGGGCGCTGCCGCCCTCGGCAGCTTTCTAGACATCGTTGGCG
CGCGGCCCAGGTTAGTTGTCATATCATATCATAATCTAATCATAATCCCA
ACTAGCTAGG

FMO04811.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1325 CG2812-RA 153..1197 40..1076 4960 98.9 Plus
Ca-P60A-RI 6306 CG3725-RI 5171..5576 638..233 2030 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4881..5109 863..635 1145 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4600..4825 1076..859 865 94.7 Minus
Ca-P60A-RI 6306 CG3725-RI 5644..5803 234..75 800 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5958..5995 77..40 190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23925807..23926212 233..638 2030 100 Plus
2R 25286936 2R 23926274..23926502 635..863 1145 100 Plus
2R 25286936 2R 23925580..23925739 75..234 800 100 Plus
2R 25286936 2R 23926558..23926783 859..1076 675 93.8 Plus
2R 25286936 2R 23925388..23925425 40..77 190 100 Plus
Blast to na_te.dros performed 2014-11-28 20:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2924..2967 357..400 121 75 Plus

FMO04811.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:14 Download gff for FMO04811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 149..1202 33..1082 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:23 Download gff for FMO04811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 146..1199 33..1082 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:32 Download gff for FMO04811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 149..1202 33..1082 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:32 Download gff for FMO04811.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23925582..23925739 77..234 100 -> Plus
2R 23925809..23926211 235..637 100 -> Plus
2R 23926277..23926500 638..861 100 -> Plus
2R 23926561..23926788 862..1082 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:14 Download gff for FMO04811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19813105..19813262 77..234 100 -> Plus
arm_2R 19813332..19813734 235..637 100 -> Plus
arm_2R 19813800..19814023 638..861 100 -> Plus
arm_2R 19814084..19814311 862..1082 93   Plus