FMO04813.5prime Sequence
1014 bp (861 high quality bases) assembled on 2008-08-08
> FMO04813.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCTTCGGG
AATAAAAATGTTACAGACCCAGCTGGCAGTAAAAATGGCTGTCAAAAAAC
CAATCCAGAAGTTACATGTTTTGCTCCAATTACTACCGTTGTATCCAAAC
CATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACAGG
GGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAATA
TGAAAAACTTAAAGAAAAAAGTAATGGCAGTGACAAAAATCGAGCAGGCG
TAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTGGA
CGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAACCT
GAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTTGC
CATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCCCT
CCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAATAC
TATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATATG
GGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCATA
GCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACACGA
AAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGGCT
CCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCTCCCCAGATG
GTATACACGGCGGCTGAGAGTGGTGACATCGGATACAGCATTACTGAGAT
TATGAAATCATCTAGCAAGGTTTGTTCTTCTACGCAACATGGGTAGGACC
CGGGGACGTTGACGATTATTTGGAACCCGATGGTAGAAGAGAATGCACAC
AAGTACAGAGAAATGAACGTGTATCTTTCCCAATCGTCCGGAACTGTGCC
AGAAGAGGAGTTAA
FMO04813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spf45-RB | 1354 | CG17540-RB | 124..1103 | 39..1014 | 4410 | 97.3 | Plus |
| Spf45-RC | 1257 | CG17540-RC | 91..1006 | 103..1014 | 4090 | 97.1 | Plus |
| Spf45-RA | 1397 | CG17540-RA | 231..1146 | 103..1014 | 4090 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23067276..23068101 | 930..103 | 3905 | 98.7 | Minus |
| 2L | 23513712 | 2L | 23068200..23068263 | 102..39 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:54 has no hits.
FMO04813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:03 Download gff for
FMO04813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RB | 124..998 | 39..915 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:31 Download gff for
FMO04813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RB | 185..1059 | 39..915 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:22 Download gff for
FMO04813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RB | 124..998 | 39..915 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:22 Download gff for
FMO04813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23067291..23068101 | 103..915 | 99 | <- | Minus |
| 2L | 23068200..23068263 | 39..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:03 Download gff for
FMO04813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22960023..22960833 | 103..915 | 99 | <- | Minus |
| arm_2L | 22960932..22960995 | 39..102 | 100 | | Minus |
