FMO04816.5prime Sequence
895 bp (895 high quality bases) assembled on 2008-08-08
> FMO04816.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCTGCATC
CCAATGCGGAGTCGCCATCGGGGAAGTGGACGGACGAGGAGATCGACATG
CTGCACTCGTCCATAATGCGCTTCTCCGACGACCTGACCAAGATCAGCCT
AAGCATCAAGAACCGCACCGTTTCTCAGATCCGCCAGGCGCTGAAGAAGA
AGGCCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCCAGCAG
GTGCAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAGCCCCT
TCAGCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCAGCACG
TACAGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGTCTAAT
ACAACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAGATGCA
GAAGGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGCCAACA
ACACGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTTCGACT
ACGGCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCGTCGAC
GCAGATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAACAGTAC
TCTCGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCAATCCT
CCAGCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCAGGCTT
AAAGTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGTCCAGG
AGAACGAGGTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCAACTGG
ATTTTGTCAGCGAGGAGGTGGCCCGGGGCAAGCTTTCTAGACCAT
FMO04816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33695-RE | 1394 | CG33695-RE | 167..1004 | 37..873 | 4165 | 99.9 | Plus |
| CG33695-RF | 1456 | CG33695-RF | 229..1066 | 37..873 | 4165 | 99.9 | Plus |
| CG33695-RD | 1300 | CG33695-RD | 208..910 | 172..873 | 3490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11278755..11279457 | 172..873 | 3465 | 99.9 | Plus |
| 2L | 23513712 | 2L | 11278574..11278673 | 72..171 | 500 | 100 | Plus |
| 2L | 23513712 | 2L | 11278450..11278486 | 37..73 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 246..552 | 198 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 245..375 | 169 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 271..489 | 163 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 245..308 | 140 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 245..311 | 137 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 266..576 | 135 | 54 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 208..308 | 132 | 60.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 208..308 | 132 | 60.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 266..307 | 129 | 78.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 245..321 | 126 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2860 | 266..318 | 121 | 69.8 | Plus |
FMO04816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:52 Download gff for
FMO04816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RF | 229..1076 | 37..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:02 Download gff for
FMO04816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RA | 6760..7607 | 37..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:03 Download gff for
FMO04816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RF | 229..1076 | 37..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:03 Download gff for
FMO04816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11278450..11278485 | 37..72 | 100 | -> | Plus |
| 2L | 11278575..11278673 | 73..171 | 100 | -> | Plus |
| 2L | 11278755..11279467 | 172..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:52 Download gff for
FMO04816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11278450..11278485 | 37..72 | 100 | -> | Plus |
| arm_2L | 11278575..11278673 | 73..171 | 100 | -> | Plus |
| arm_2L | 11278755..11279467 | 172..885 | 99 | | Plus |
