FMO04817.5prime Sequence
1238 bp (1080 high quality bases) assembled on 2008-08-08
> FMO04817.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGAGCTT
TGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCAATG
GATCGGTGGTGGACAAGGTCACGCCCGACATGGCCCACCTGATCAGCCCG
TACTGGAACCAGTTCCCCGCCATGGACCCCATTTGGGCCAAGATCCTGAC
CGCCTACATGATCATGATCGGCATGATTTCCTGGTGCGGAAATGGCGTGG
TGATCTACATATTCGCCACCACCAAATCACTGCGCACGCCCGCTAACCTG
CTGGTCATCAACCTGGCCATCTCCGACTTTGGCATCATGATCACAAACAC
GCCCATGATGGGCATAAATCTGTATTTCGAGACCTGGGTGCTCGGACCCA
TGATGTGCGACATATACGCCGGACTGGGCTCGGCCTTTGGCTGCAGCTCC
ATCTGGTCCATGTGCATGATCTCCCTGGATCGCTACCAAGTGATCGTCAA
GGGCATGGCCGGCCGGCCGATGACCATTCCGCTGGCCCTGGGCAAGATTG
CCTACATCTGGTTCATGTCGAGCATTTGGTGCCTGGCGCCCGCCTTCGGC
TGGAGCAGGTATGTGCCGGAGGGTAACCTGACCTCGTGCGGTATTGACTA
CTTGGAACGCGACTGGAACCCACGCTCATACCTGATCTTCTACTCCATCT
TCGTGTACTATATTCCGCTGTTCCTGATCTGCTACTCTTACTGGTTCATC
ATTGCTGCTGTCTCCGCCCACGAGAAGGCCATGCGCGAGCAGGCCAAGAA
GATGAATGTCAAGTCCCTCCGCTCCTCTGAGGATGCCGAGAAGAGCGCCG
AGGGCAAGCTGGCCAAGGTGGCTCTGGTCACCATCACGCTGTGGTTCATG
GCGTGACACCATACCTGGTCATCAACTGCATGGGACTTGTTCAAGTTCGA
GGGCCTTACACCACTGAATACCATTTGGGGAGCTTGCTTCGCAATCGGCC
GCCTGCTACATCCAATTGTATACGCATCAGCCATCCGAAATATCGCCTGC
CCTCAAGAGAAGTGTTCCTTGCTGCGTCTTTGCCAAGTCGACGATGGCAA
ATCGAGGCGATGCCCATCGCAGCACCGCCCAGGCAAGCCGAGTCCAAGCA
CCAGCTTTCTAGAACATTGCTTGGACGCGTCAGTTAGTTGCCTATATCTA
TCTATACATATCTATTACCCCACCCATTGACCTCATGG
FMO04817.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaE-RA | 1588 | CG4550-RA | 177..1292 | 40..1148 | 5185 | 98.3 | Plus |
| Rh2-RA | 1365 | CG16740-RA | 272..1087 | 235..1046 | 660 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19887397..19887961 | 610..46 | 2825 | 100 | Minus |
| 3R | 32079331 | 3R | 19886747..19887017 | 1024..757 | 1145 | 98.2 | Minus |
| 3R | 32079331 | 3R | 19887075..19887225 | 757..607 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 18899790..18900538 | 235..983 | 590 | 72.5 | Plus |
| 3R | 32079331 | 3R | 19886594..19886673 | 1106..1029 | 190 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:39 has no hits.
FMO04817.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:02 Download gff for
FMO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1292 | 32..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:27 Download gff for
FMO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1292 | 32..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:46 Download gff for
FMO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1292 | 32..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:46 Download gff for
FMO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19886594..19886671 | 1031..1106 | 93 | <- | Minus |
| 3R | 19886740..19887017 | 757..1030 | 97 | <- | Minus |
| 3R | 19887076..19887223 | 609..756 | 100 | <- | Minus |
| 3R | 19887399..19887961 | 46..608 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:02 Download gff for
FMO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15712316..15712393 | 1031..1106 | 93 | <- | Minus |
| arm_3R | 15712462..15712739 | 757..1030 | 97 | <- | Minus |
| arm_3R | 15712798..15712945 | 609..756 | 100 | <- | Minus |
| arm_3R | 15713121..15713683 | 46..608 | 100 | | Minus |
