FMO04819.5prime Sequence
682 bp (682 high quality bases) assembled on 2008-08-08
> FMO04819.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAATGG
GCGAGCCCACGTCGTCTCTCGTTCTGCCCGTCATACTGCGGCCCATTTTC
TCCCAGCTCGAGCGACGCGACGTTGGCGCTGCCCAATCTCTGCGCTCCGC
CATTCTCAAGTCGGAGCAGAACAATCCGGGCTTCTGCTATGACCTCGTAG
CCACAATTGTGCGGCGGGCCGATCTGAATGTTAACCTAAACGAGGCCGTG
CTCCGATTGCAGGGCAAAATTACGGAAGCGGACCTCAATGAATACCGCTT
GACGCGCACGGAGGAGCCCTTCCAGGAGCTCAATCGTAAGTCCGTGGCTC
TCAAGGTGATCCTCAGCCGCATACCCGATGAGATAAACGACAGGAAGACC
TTCCTGGAGACCATCAAGGAAATCGCCAGCGCCATAAAGAAACTACTCGA
TGTGGTCAACGAGATCGGCTCGTTTATACCTGGCGTAACGGGCAAGCAGG
CTGTGGAGCAGCGTAAGAAGGAGTTCGTCAAATATTCCAAGAAGTTCAGC
ACAACGCTGAAGGAGTACTTCAAAGAAGGACAACCGAATGCAGTATTCAT
AAGTGCACTTTTTCTAATACGGCAAACGAATCAAATAATGCTGACAGTTA
AGAGTAAATGCGAGGCAAGCTTTCTAGACCAT
FMO04819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccm3-RA | 1589 | CG5073-RA | 196..819 | 41..664 | 3120 | 100 | Plus |
| CG6136-RD | 2071 | CG6136-RD | 1..61 | 101..41 | 305 | 100 | Minus |
| CG6136-RC | 2177 | CG6136-RC | 1..61 | 101..41 | 305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15372392..15372572 | 104..284 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 15372849..15373013 | 418..582 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 15372631..15372764 | 285..418 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 15373386..15373467 | 583..664 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 15372152..15372217 | 41..106 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:26 has no hits.
FMO04819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:32 Download gff for
FMO04819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5073-RA | 189..819 | 34..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:34 Download gff for
FMO04819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5073-RA | 187..817 | 34..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:24 Download gff for
FMO04819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccm3-RA | 189..819 | 34..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:24 Download gff for
FMO04819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15372145..15372217 | 34..106 | 95 | -> | Plus |
| 3R | 15372395..15372572 | 107..284 | 100 | -> | Plus |
| 3R | 15372631..15372763 | 285..417 | 100 | -> | Plus |
| 3R | 15372849..15373013 | 418..582 | 100 | -> | Plus |
| 3R | 15373386..15373467 | 583..664 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:32 Download gff for
FMO04819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11197867..11197939 | 34..106 | 95 | -> | Plus |
| arm_3R | 11198117..11198294 | 107..284 | 100 | -> | Plus |
| arm_3R | 11198353..11198485 | 285..417 | 100 | -> | Plus |
| arm_3R | 11198571..11198735 | 418..582 | 100 | -> | Plus |
| arm_3R | 11199108..11199189 | 583..664 | 100 | | Plus |
