FMO04822.5prime Sequence
883 bp (883 high quality bases) assembled on 2008-08-08
> FMO04822.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGACC
AAAAAACAGTAAATTTGCTGTGGAACTGTGCCTCCAAGCTGACCGACCAA
ACCCACACAGAACGGATCCTCAAATCCTATTACATAACCACCTGTAGGAA
GCTGGCCCGGCACAATGTCCAGTTGCCCGAGGAGAGCTTTGGACCCGCAC
GCATGTGCTCCCGCTGCGGGAACCAGTGGACAGGTGGCCGCTACCAGCTC
CACCTCCAGCCACAAGAACTGATGCAGAGTGCTAAGAACCGGAGACTGAT
CACCAAGCTGGAAGCCGTGAAGGGCAAGATGGCAAAGGGCGAGATGAACA
GCGGGGCCAGGAAACGGGCCAAGTGGCTCAAGAAGCGTATGGCCAGTAAC
ATGGCCGTGGACTGCGATGTTTGCCATCACAAGACAATGTTGGCTCTGGA
GAAGAGCCGAAAGCGCGCCAAAGTAAAAGCCACGGAGGAGACAATGGTAG
TCACACAACCTGCGCCAGCGGGCCAAAACAAAAAGAAGGCCAAAACGAAG
AAGTCTCAGGCGCCGAATAAAGATATCAATGCAGGCCTGAAAATGCAGCA
AAAAGCGCCTCAGCGACAGCAGCAGCCTTCGAAATCGCCAGCTCCATCCA
AAAACGCGTCCCAACCAGTCGGCATAGCTTCCCAAAACCCAAGTCAGACA
TCGAAGAAGAAAAAGAAGAAGCCTGCCCAGCCAGCGCCCACCGCACCAAA
AACGCAGTCCAAAACCCAGAAGCAGAACGTACTGCTGCAAATAGCTGCCC
AGCTGAAGTCGAACGCGTTTAAAGACGCCAGCAAACGCAGCAGATCGCCT
CCAAGCGTTCCTCAAGGCAGCTTTCTAGACCAT
FMO04822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1360-RA | 1757 | CG1360-RA | 195..1023 | 40..866 | 4095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7588507..7588972 | 866..403 | 2230 | 99.6 | Minus |
| 2R | 25286936 | 2R | 7589266..7589534 | 404..136 | 1345 | 100 | Minus |
| 2R | 25286936 | 2R | 7589595..7589690 | 135..40 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:08 has no hits.
FMO04822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:35 Download gff for
FMO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1360-RA | 183..1027 | 28..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:54 Download gff for
FMO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1360-RA | 180..1024 | 28..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:57 Download gff for
FMO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1360-RA | 183..1027 | 28..871 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:57 Download gff for
FMO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7588503..7588971 | 404..871 | 99 | <- | Minus |
| 2R | 7589267..7589534 | 136..403 | 100 | <- | Minus |
| 2R | 7589595..7589697 | 35..135 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:35 Download gff for
FMO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3476008..3476476 | 404..871 | 99 | <- | Minus |
| arm_2R | 3476772..3477039 | 136..403 | 100 | <- | Minus |
| arm_2R | 3477100..3477202 | 35..135 | 97 | <- | Minus |
