FMO04823.5prime Sequence
1219 bp (1053 high quality bases) assembled on 2008-08-08
> FMO04823.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGGCCATC
CAATTGTTCAACGAAATCGGCAGTATTTTCCGAAACACCCCCACGTTTGC
TCTCGTCTTGGAGACCCTACTGCTCATAACCGTGATTTGGTTGCTGCTCC
ACAGACGAGGAGGAGGTCGTCGCCGACAGCTGACCAAGGAGGAGGAAGAC
CGAATAATCGCCGACTATGAACCAGAGCCCTTGGTGGCCGACACCGATCC
CAATCATCCCCTGCTGCACACCCGCGTTGTGCAGTCCAGGGTGGGCAAGC
GCATCCAGGTCGATGGACACGACTGCCTAAATCTTGGCTCTCACAACTAT
CTTGGCTTCCTCGAGGACCAGGAGATACTGGAGGAGGCCTGCAAGTCGCT
GCGCAAGTACGGAGTTGGATCTTGCGGACCTCGGGGCTTCTACGGCACTA
TGGACGTGCATCTGGACCTGGAGGATCGTATTGCCAAGTTCATGGGCCTG
GAGGAGGCCATTGTCTATTCCTACGGCTTCTCGACCGTGGCCAGTGCCAT
TCCGGCGTATGCCAAACGTGGCGACCTTATCTTTGTGGATGAGGCTGTCA
ACTTTGCCATTCAGAAGGGTCTGGATGCTTCACGAAGCACAATCGTTTTC
TTTAAGCACAATGACGTTGAGGATCTAGAACGTCTGCTGATTGAGCAAGA
AAAACGAGACCAGAAAAATCCGAAAAAGGCGGCTAAGACACGTCGCTTCC
TCGTCGCCGAGGGTATCTATATGAATACGGGCGAGATTTGCCCACTTCCC
GACCTGGTGGCCTTGCGTCAGAAGTACAAGCTGCGTTTGTTCATCGACGA
AAGCATCTCCTTTGGCACATTGGGCCAGGGTGGTCACGGAGTTACGGAGC
ACTTTAATGTCGATCGTGATGAAGTCGATCTGATATCGGCCGGCATGGAG
GGTTCGATGGCAACAGTCGTGGCTTCTGTGTTGGCTCGCACTTCATAGCC
GAGCACAGCGGCTCTCTGGCTTGGGCTACATCTCTCGCCTCGCTGCCGCC
CATGCTCACCAGGCGGCTATTCAGCGTGATCGTTTCGACGGAAACACAAT
CTTCGGCAGCTGCAGGCAAGTTAGACGTGCACGAGGTTTTGGCATTCACC
AGCTACCTGGCCGGCATGAGGGTCCAGTAAGACCATGTATCTCTGCAGCC
CGCCGAGAAACTGCACGAG
FMO04823.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt-I-RC | 1769 | CG4016-RC | 100..1298 | 39..1209 | 5150 | 96.7 | Plus |
| Spt-I-RA | 1727 | CG4016-RA | 58..1256 | 39..1209 | 5150 | 96.7 | Plus |
| Spt-I-RB | 1799 | CG4016-RB | 130..1328 | 39..1209 | 5150 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13168951..13169451 | 87..587 | 2505 | 100 | Plus |
| 2R | 25286936 | 2R | 13169507..13169834 | 587..914 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 13169890..13170051 | 915..1071 | 545 | 96.3 | Plus |
| 2R | 25286936 | 2R | 13168841..13168888 | 39..86 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:22 has no hits.
FMO04823.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:04 Download gff for
FMO04823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-I-RB | 124..1242 | 33..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:24 Download gff for
FMO04823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-I-RC | 92..1210 | 33..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:41 Download gff for
FMO04823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-I-RB | 124..1242 | 33..1135 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:41 Download gff for
FMO04823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13168835..13168888 | 33..86 | 96 | -> | Plus |
| 2R | 13168951..13169450 | 87..586 | 100 | -> | Plus |
| 2R | 13169507..13169834 | 587..914 | 100 | -> | Plus |
| 2R | 13169890..13170126 | 915..1135 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:04 Download gff for
FMO04823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9056340..9056393 | 33..86 | 96 | -> | Plus |
| arm_2R | 9056456..9056955 | 87..586 | 100 | -> | Plus |
| arm_2R | 9057012..9057339 | 587..914 | 100 | -> | Plus |
| arm_2R | 9057395..9057631 | 915..1135 | 91 | | Plus |
