FMO04824.5prime Sequence
1221 bp (1052 high quality bases) assembled on 2008-08-08
> FMO04824.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAACGGCG
CTGGATGTACTCTCTAGAGCGGCGACCATGGTGCAAAACAATCCCAGCGA
GATGCGTGCGACGTCCAAGGTGCTGACCACCACCAAATGGCGACGCGAGC
GGCGTCAGCGTAGTGCCGGATACCAGCCGCACGAGGCAGGCAACAGCGAG
AGGGAGCGGGAACGGGAGCGGGATCGAGAGGATCGCGACATGGACAGTCC
CATTGACATGTCGGTGACGACGGGAGCTCTGAAGCAGAGAGCCTCACCGC
CGCCACCCTATCGCGAACCCTTGCCTGGGACCAACTACGCGGCCAACAGT
CGACCCAGCGTCATTACCCAGGCTCCACCCAAGCGAGAACCACCGGAGCA
GGCCCACTCTACAGATATGGCGATGTGCGACATTGACGAGCACTTCCGAC
GCTCACTGGGCGAGAACTATGCTGCCCTGTTCGCCAAGAAGTCACCGACG
CCTACGCCAACACCCACGCCCTCGCCAAGTGGTACACCTAAGCAGCAGGT
TTCGCCACTGGCCTACGGACTGCCTTCATCAACCAGCACAGCGGCATCGC
AGCACTACCAGCAGCAACGCTCGCCGCTGGCCAAGTCGGGATGGGTCATT
CTGGAGCCCGAATCGCTGCAGCCGGAACTGCCGCCGCCGCAGGAGGAACC
GCTTCCCCTGTCGCTGGCACTGCATCGCACCCAAACGCCGCCATCGCCGC
CACCTTCGGCCACGGGATCGGCACCAGCGCTACCCACGGCCGTCAGCCAG
GTGATGGAGGCAGCGGTGGCGGGCAGGCGGATCCTGGACACGCCACACCA
CACGCCGCCGAGATACAACACACCACCGCCTCCACCGCCGGCTTACGGAA
AAGCCGGAACCACCGTTGTGCGCCGACTTTGACACCGACACCAACTCCGA
ATCCGACGCCGTCGCAGATTCCCACGCCCACGCCCAGCATGCGGCCATCA
TCAGGGTGAAGCTGAACCGGGACTGGCGGCGTGGCTGCCTCCTCGACGCC
AAACGCCGCCTCGCTCGCCCACCTCGTCACGAATATCTCGATATTCACCA
AGACTGAGCCTCGAGGACGACCACTTGGCCAGGCCTGGCGAAACTGAGAA
GCTTGCAGCAGTCAAGAGCAAGCTTCTAACAATCGTTGCGGCGCCGGCCA
GGATGGCAGAGGTGGTCTACT
FMO04824.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tgi-RB | 1904 | CG10741-RB | 318..1434 | 38..1145 | 5180 | 98.3 | Plus |
| Tgi-RA | 2045 | CG10741-RA | 520..1575 | 99..1145 | 4875 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13501280..13501979 | 412..1107 | 3085 | 98 | Plus |
| 3L | 28110227 | 3L | 13500899..13501214 | 99..414 | 1580 | 100 | Plus |
| 3L | 28110227 | 3L | 13487669..13487730 | 38..99 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:06 has no hits.
FMO04824.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:39 Download gff for
FMO04824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10741-RB | 313..1434 | 29..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:30 Download gff for
FMO04824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10741-RB | 306..1427 | 29..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:48 Download gff for
FMO04824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgi-RB | 313..1434 | 29..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:48 Download gff for
FMO04824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13487664..13487730 | 29..99 | 94 | -> | Plus |
| 3L | 13500900..13501214 | 100..414 | 100 | -> | Plus |
| 3L | 13501283..13501986 | 415..1113 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:39 Download gff for
FMO04824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13480764..13480830 | 29..99 | 94 | -> | Plus |
| arm_3L | 13494000..13494314 | 100..414 | 100 | -> | Plus |
| arm_3L | 13494383..13495086 | 415..1113 | 98 | -> | Plus |
