FMO04825.5prime Sequence
586 bp (586 high quality bases) assembled on 2008-08-04
> FMO04825.5prime
TTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGCTGGCATCA
AGAGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGGCGAGGAGTAC
CTGAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGTCGAGCCGTGT
CGTCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGATAGCCCCAAGA
GTCCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGATGAGCTCAGA
AACGTGTACATCAACTACTGGACCAAGGGAGGAGACAAACAGAATGCAGG
CAATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGTAGCTGGAACA
TTGAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAAAAAGAAGACT
AACACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCAACTCGTTGTT
CTCCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTCCTGTCCCTGC
TGCTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGGCATACTCCTT
ACCCGTGTGGTCATTGACGCAAGCTTTCTAGACCAT
FMO04825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 1543 | CG5059-RE | 276..806 | 38..568 | 2655 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 210..740 | 38..568 | 2655 | 100 | Plus |
| CG5059-RB | 1344 | CG5059-RB | 77..607 | 38..568 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516100 | 285..38 | 1210 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 520..337 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 339..276 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 568..519 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:25 has no hits.
FMO04825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:49 Download gff for
FMO04825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 34..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:57:27 Download gff for
FMO04825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 496..1034 | 34..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:28 Download gff for
FMO04825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 34..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:28 Download gff for
FMO04825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515329..20515383 | 520..573 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 340..519 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 278..339 | 100 | <- | Minus |
| 3L | 20515861..20516102 | 34..277 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:49 Download gff for
FMO04825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 520..573 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 340..519 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 278..339 | 100 | <- | Minus |
| arm_3L | 20508961..20509202 | 34..277 | 99 | | Minus |
