FMO04826.5prime Sequence
972 bp (786 high quality bases) assembled on 2008-08-08
> FMO04826.5prime
CCTTATACGATTTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCTTCG
CCTCAAGGATGAATACTCCGAACCGGGTGCCCAGAATGTAGACTAGCCGT
CAAAGGACGAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACG
AAGAAGACCAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAA
GGCCATCGATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCTC
TTTTCACCACCCGGGAGCAGGTATTCGAGTTTCTAGACGTGATGCTGGAG
CACAAGTTCTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGAT
CAGAGGAAAGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAG
ATAAGGAAAAGGACAAGGCAAAGGATGATAAGAAGGATACCGATCCGGAA
GGCGATAATGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAA
GGAGAAAAAGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTG
AGCAGATCTTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCC
ATACCGCTCCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGT
TGGCATTTGCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCT
ACTACTTGTCCATTGCGGCTGCCGGCTTCCTTGTTTCATCCTGGCTCTGA
CAATTGTACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGC
AAGTTGCACTTCCTGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTT
CGCCTCCTTCTGGCCACTATATGAAAAGCAATTATACAGTGACCCAATAT
TATTTCGTCCGCCAGACCTACAGAAATCGAATCTAAAGACAAGAAAAAGG
AAAATAATAGCAATGCCAAAGA
FMO04826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trp1-RD | 1484 | CG4758-RD | 121..1065 | 25..967 | 4225 | 96.9 | Plus |
| Trp1-RA | 2045 | CG4758-RA | 121..1065 | 25..967 | 4225 | 96.9 | Plus |
| Trp1-RC | 1532 | CG4758-RC | 205..1113 | 61..967 | 4075 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10010737..10011551 | 61..874 | 3905 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:13 has no hits.
FMO04826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:25 Download gff for
FMO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RA | 121..1018 | 25..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:04 Download gff for
FMO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RA | 116..1013 | 25..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:32 Download gff for
FMO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RA | 121..1018 | 25..922 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:32 Download gff for
FMO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10009501..10009536 | 25..60 | 94 | -> | Plus |
| 2L | 10010737..10011551 | 61..874 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:25 Download gff for
FMO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10009501..10009536 | 25..60 | 94 | -> | Plus |
| arm_2L | 10010737..10011551 | 61..874 | 98 | == | Plus |
