FMO04827.5prime Sequence
1235 bp (1038 high quality bases) assembled on 2008-08-08
> FMO04827.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCACGGC
ACCGCGATCCCTGGATACCATCTCCCTCTGCTCGACCGTTTCCAGCTGCC
CGGACCGAAATGGCTTCTATGGCGGTTTCCAGCGCACAGACAAGCCAAAG
GAGCCGCTGTCCAAGGCACAGATCATCGCGCGGGAGAAGAAGTGGCTCTA
CATGATCGACAACTGGTCCATTTACATGTCAAAAAACTACAAAAAGATCC
GAGATCGCTGTCGCAAGGGCATACCCAAGTCGGTGCGACCCAAGGCCTGG
TTCTATTTATCGGGGGCGTATCTGCTAAAGAAGAAGAACCCCAACGTTTA
CAACGAGCTTCTGGAAAAGCCCGGTAACCCGACGACCATCGAAGAGATCA
AGAAGGATAAGCATCGCCAGTTCCCGTTCCATGAAATGTTTCTCGACGAG
CAGAAGGTCGGACAAATCGAGCTCTTTAATGTGCTAAAGGCCTACTCGAT
ATACAATCCCAAGGTGGGCTTCTGCCAGGCGCAAGCACCAATAGCAGCGT
TCCTATTGATGCACCTGCCCGCGGAGGACGCCTTCTGGGTGTTTGTCAGC
GTGTGCGATGTATACCTGCAGGACTATTTCATACCCGGTTTGGAGGTGAT
CCAGAACGATGCTGGCATCCTGGAGGGTCTGCTGAAGAAGACATGCCCGC
CCGTGTACCGGCACCTGCAGAAGCACAAAGTGGAGCCGCTGCTCTACATG
ACCGACTGGTTCCTGTGCGCGATGACGCGGACTCTGCCCTGGGAGACACT
GCTGCGAGTATGGGATTGCTTTCTAGCCGAACGCATCCGCGTGATCTTCA
AGGTGGCTCTGGTCATTATTGGGGCTTCACTAAGCCGACACAAGGTGCGA
AAGACGTGTACTGGTCTCTGCGAGACGTTGGCAGTGCTGCGTTCACCCGA
GGAGCATATCGTGAGAGAGTTCATCATCAACAATATGATGCGACTGAATC
TGCGCGTAGAGGACTTCCAGATCGAGCACCCACGCCAAAATGCTCGCGTG
CGAAAAGAATGCACAGCAGGAGGCGGAGTCAGCGGTTCGGCACGACATCG
CGCACATGCCACGCTGCAAGCTTTCTAGAACAATCGTTGGGCGCGCGGGG
CCAGGTAATGCCTATCTAATCTAAATCCTAATCTATCCACACCTAGCACT
AGGAGAAATCTCGGGGGTCACTGTAGACGCACATA
FMO04827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wkd-RB | 2119 | CG5344-RB | 366..1454 | 40..1116 | 5055 | 98.3 | Plus |
| wkd-RA | 2054 | CG5344-RA | 301..1389 | 40..1116 | 5055 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11584124..11584597 | 612..1080 | 2070 | 97.3 | Plus |
| 3R | 32079331 | 3R | 11583699..11584065 | 245..611 | 1820 | 99.7 | Plus |
| 3R | 32079331 | 3R | 11583350..11583556 | 40..246 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:44 has no hits.
FMO04827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:17 Download gff for
FMO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wkd-RA | 299..1375 | 36..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:48 Download gff for
FMO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wkd-RB | 364..1440 | 36..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:14 Download gff for
FMO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wkd-RA | 299..1375 | 36..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:14 Download gff for
FMO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11583338..11583556 | 32..246 | 96 | -> | Plus |
| 3R | 11583701..11584065 | 247..611 | 99 | -> | Plus |
| 3R | 11584124..11584602 | 612..1082 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:17 Download gff for
FMO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7409060..7409278 | 32..246 | 96 | -> | Plus |
| arm_3R | 7409423..7409787 | 247..611 | 99 | -> | Plus |
| arm_3R | 7409846..7410324 | 612..1082 | 97 | -> | Plus |
