FMO04828.5prime Sequence
1211 bp (1052 high quality bases) assembled on 2008-08-08
> FMO04828.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGAGAACGCCG
CCCCACCCGCAGCCGCAACAGCCGCGGGCTGCGATGCCGCCACCCGTCAA
AAGAATCCGGAAACCAGTGTCCGGCTGCTCATCAAGTCGTCCAACCAGCA
GTATGAGGATCTCAATGTGGACTCCGATCTCTGCTGGACGGTCCAGAGGC
TGAAGAAGCACCTATCTCTTATCTATCCTGGCAAACCGTTAATCCAGGAC
CAGAAACTTATTTACTCGGGCAAGCTATTAGATGACTCCCAAAAGATATC
TGAGGTGATACGCAGCTACAAGGATGTCTACCAACAGCACCACATATTTC
ACTTGGTGTGTGCCAGCAAGCAAGTGATAAGGCCGGCTGCCAAAGCCCCC
ACTGTTCCGCAGAAGGATGCGGTTCCAGCTGGGCCCGAGGTCACTGGGAA
TGCAAATGAGCTGCGACAACGTCATGCTCCACATCAGCAGCAGGCACAGC
AGGGCAACGCTGGACCACACGTGACGGGTGACATCGGTTTGGCCAATCCC
TGGACACACTTCTGGCAGCAGAGCCAGGGAGCAGCACCTGCTGCCAATGC
CAGTGCCAGTCCCCATGCTTTGTTCCAGCAGCAGGCGCTCATCTACAACG
CCTGGATGCAGCAGGCTTACGCGCAGTACATGCAGCAGTTGACTCTACGT
TCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCACCGACTCAACC
CCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTTCGGGGAGGTAC
AACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCAAAGGTACCTGCTGAT
CCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCCAACATTCAGGA
GGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAGCTTTACGCGAT
TGGCCATTTTTGTGACTGTCCTGTACTTTAACCTCCTCAGCGCTGCGTTG
TTTACTGGTGGTGCTCATCGCGGGTGCGATTTATTCTATATCACATTGGT
GTCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAAATCGTACATA
TGCTGGCGATGCGCCGCCTTGGCTGCATGCAGCAATCAACGCAGGATGAT
CGGCGTGCACGGAAATCACGATTCCAAGGCGCCATGAACCTGGGTGCATG
TCACACCGGCA
FMO04828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Herp-RC | 2560 | CG14536-RC | 547..1665 | 35..1148 | 5285 | 98.7 | Plus |
| Herp-RA | 2117 | CG14536-RA | 336..1454 | 35..1148 | 5285 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7798163..7798624 | 699..238 | 2310 | 100 | Minus |
| 2L | 23513712 | 2L | 7797399..7797733 | 1034..699 | 1615 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7799309..7799512 | 238..35 | 1020 | 100 | Minus |
| 2L | 23513712 | 2L | 7797273..7797326 | 1090..1038 | 220 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:34 has no hits.
FMO04828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:54 Download gff for
FMO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 328..1439 | 26..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:17:13 Download gff for
FMO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 327..1438 | 26..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:14 Download gff for
FMO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 328..1439 | 26..1135 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:14 Download gff for
FMO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7797224..7797326 | 1038..1135 | 92 | <- | Minus |
| 2L | 7797397..7797732 | 700..1037 | 99 | <- | Minus |
| 2L | 7798163..7798623 | 239..699 | 100 | <- | Minus |
| 2L | 7799309..7799522 | 25..238 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:54 Download gff for
FMO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7797224..7797326 | 1038..1135 | 92 | <- | Minus |
| arm_2L | 7797397..7797732 | 700..1037 | 99 | <- | Minus |
| arm_2L | 7798163..7798623 | 239..699 | 100 | <- | Minus |
| arm_2L | 7799309..7799522 | 25..238 | 97 | <- | Minus |
