FMO04830.5prime Sequence
1237 bp (1049 high quality bases) assembled on 2008-08-08
> FMO04830.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCTAGCC
AGATTGCCGGTGAACGAATGTCAGGCAAGCCAAACAGCTAGAGTCACCTC
GAACCTGCACGCATCCAGTAGCACGATGGCGGTCAGCCGTGTACCATCGC
CGCCCTTGCCGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACG
CAGGTCAAAGTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAG
TTTTTGTCGGGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAG
CCGGTGCTAATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGT
CTCGACGAGGAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTC
GTGTAATAAATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATG
CGAAGCGTGAGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTT
GTGCAGGGCAAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCT
GCTGGACGAGGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCT
GCGAGGTCAGCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAAT
ATCGTGCAGTTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAA
TCTATTTGACAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTC
GAGAGTTCCAGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTT
GCGGCCATGTTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGC
CATAACCGATGTGGATCATGATGTTCTTAAAGAAATGCTGCGATTCATAT
ACACGGGCAAGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCG
GCTGCTGATAAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGAGCGC
TGTGCGTCATCTCTCTGTAGAACAGCAGCCGAATCCCTATATTAGCTGAT
CTCCACAGTGCGATCATTGAAAGCAAAACCGATAGATTTCATAAAAACTC
ATGCAACGGATTGATGGAAACCCTCGGCCTGCCAATATGATCCCCACCAA
TTCCAATTTGGATGCGAGCATCGTGCGTGAACAACATTCCACACCAAATG
GTAACACCCCAAGAATTGACAGCGCGCTGAGATTTGG
FMO04830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RC | 2802 | CG12537-RC | 360..1472 | 39..1142 | 5160 | 98.1 | Plus |
| rdx-RF | 3856 | CG12537-RF | 532..1632 | 51..1142 | 5100 | 98.1 | Plus |
| rdx-RE | 4159 | CG12537-RE | 1729..2829 | 51..1142 | 5100 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13969909..13970206 | 783..486 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 13969608..13969790 | 962..780 | 900 | 99.5 | Minus |
| 3R | 32079331 | 3R | 13970278..13970440 | 487..325 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 13970950..13971105 | 205..50 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 13970505..13970634 | 328..199 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 13969400..13969541 | 1095..961 | 335 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:46 has no hits.
FMO04830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:45 Download gff for
FMO04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RC | 350..1457 | 30..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:50 Download gff for
FMO04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RD | 340..1447 | 30..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:36 Download gff for
FMO04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RC | 350..1457 | 30..1128 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:36 Download gff for
FMO04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13969397..13969539 | 963..1098 | 92 | <- | Minus |
| 3R | 13969608..13969786 | 784..962 | 99 | <- | Minus |
| 3R | 13969909..13970204 | 488..783 | 100 | <- | Minus |
| 3R | 13970278..13970439 | 326..487 | 100 | <- | Minus |
| 3R | 13970508..13970629 | 204..325 | 100 | <- | Minus |
| 3R | 13970952..13971113 | 39..203 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:45 Download gff for
FMO04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9796000..9796161 | 326..487 | 100 | <- | Minus |
| arm_3R | 9796230..9796351 | 204..325 | 100 | <- | Minus |
| arm_3R | 9795119..9795261 | 963..1098 | 92 | <- | Minus |
| arm_3R | 9795330..9795508 | 784..962 | 99 | <- | Minus |
| arm_3R | 9795631..9795926 | 488..783 | 100 | <- | Minus |
| arm_3R | 9796674..9796835 | 39..203 | 96 | | Minus |
