FMO04831.5prime Sequence
944 bp (944 high quality bases) assembled on 2008-08-08
> FMO04831.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGACTGCAGC
GAACTCGGGCGACTCCAAAAAGCCTTTCAAAGTCAAGGACGTAACACGCA
ACATTAAGAAGGCTGTCTGCGCCTCCAGTCTGGAGGAGATCCGCAGCAAG
GTGGCGGAGAAGTTCGAGAAGTGCGACCACCTGCCCACCATCCACCTGGA
CTCCGACGGCACGGAGATCGATGATGAGGAGTACTTTCGCACCCTCGACG
AGAATACGGAACTGGTGGCCGTCTTTCCCGGAGAACATTGGATCGATCCC
ACTCACTACGTGACGATAACCACTCCACATGGCAACGAGGCAGGAACTGG
AAACGGAGAGCTGAACGGAGGAGGCGAGGGCGACACCACCGATGCCAACA
ACTCGGAGTCGGCTCGCATCCGCCAGTTGGTGGGCCAGCTGCAGAACAAC
CTCTGCAACGTGTCCGTGATGAACGATGCCGATCTGGACTCACTCTCCAA
CATGGATCCCAACTCGTTGGTGGACATCACGGGAAAGGAGTTTATGGAGC
AGCTCAAGGATGCGGGAAGGCCATTGTGTGCCAAGCGGAATGCCGAGGAT
CGTTTAAATCTGCTGAAGCTATTGAAAGCTGGTGCCATTTTCTGCTCGGA
ACGTTATCCCGAGGATGCGGAGGCCATTGACCGGGAGATTGGACGGCAGT
TGAACGAGGCGGAGAGTGGACAGATGAGCACCACAACGACGAGCAACACC
CGCACCATCGAGGTGGTGCAGTGCGACAATCAAAACACGACGATAACAAT
TACGGTGGGCGAGGCCACCACCACTTGCGCCACAGCCAGTGGAGCGATGG
GATCCTCCGCTGCCGAAGCGGCTGCCAATGAGGCCAATGCCAATCCAAAT
AGAAATCCAATGCCAACGGCGACATCGCAAGCTTTCTAGACCAT
FMO04831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-1-RB | 2153 | CG8357-RB | 252..1143 | 36..926 | 4435 | 99.9 | Plus |
| Drep-1-RA | 2153 | CG8357-RA | 252..1143 | 36..926 | 4435 | 99.9 | Plus |
| Drep-3-RA | 1799 | CG8364-RA | 649..765 | 193..309 | 180 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12048803..12049162 | 568..926 | 1750 | 99.7 | Plus |
| 2R | 25286936 | 2R | 12048475..12048747 | 298..570 | 1365 | 100 | Plus |
| 2R | 25286936 | 2R | 12047976..12048191 | 82..297 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 12044863..12044910 | 36..83 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:55 has no hits.
FMO04831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:36 Download gff for
FMO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-1-RA | 249..1148 | 30..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:29 Download gff for
FMO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep1-RA | 247..1146 | 30..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:38 Download gff for
FMO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-1-RA | 249..1148 | 30..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:38 Download gff for
FMO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12044860..12044908 | 30..81 | 94 | -> | Plus |
| 2R | 12047976..12048191 | 82..297 | 100 | -> | Plus |
| 2R | 12048475..12048746 | 298..569 | 100 | -> | Plus |
| 2R | 12048805..12049167 | 570..933 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:36 Download gff for
FMO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7932365..7932413 | 30..81 | 94 | -> | Plus |
| arm_2R | 7935481..7935696 | 82..297 | 100 | -> | Plus |
| arm_2R | 7935980..7936251 | 298..569 | 100 | -> | Plus |
| arm_2R | 7936310..7936672 | 570..933 | 98 | | Plus |
