FMO04833.5prime Sequence
1206 bp (1044 high quality bases) assembled on 2008-08-08
> FMO04833.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATCATGCAGGAT
ATACGCCTACGCCTGGAACCACAGCACAGTAAAGCCACATTCATATCCTC
CTCCTCGGCCTCATCGTCCTCATCCCAAACAGCTGAGACCACGCTGATTG
AGACAGCTGAGAAGTCGCCAGCCAGTGAAGCAGCTGCTGGAACAGTGACA
ACGACATCGCCGCAGCATTTCTTCCATCATCATCATCCGCCGGCTCATCC
GCATCCGCCCCGCCAGCAGCCGCATCCGCATAGCCACTCGCATCCGCATC
CGCATCCGCAACTCCAGCGCCGCCCGGTGGAGCAGCTGCATCTGCTGCAT
AGCCACCACGATGTCCAGGAGCTGTCCGGACAGGAGCATCCACATCCGCA
ACCCGGCTCGCATCCGCATCCGCACCATCTGCGCTCGCCCAGCTCCGAGG
AGGATAATTCGCCCACAGAAATGAATAATTGCCGTCGTTTGGTGGATAAG
CCGCCGCTGGTGAAACGCCTGACCATGGGCATTGGACTGCTGCGGGGAAC
CGAGGACAGCCGCCCCCTGATGCACAGCACCTGCGGCTCCTCGCTGACCT
CCGGATCCGGCTGTGGATCCACTCAGACCATCTCCGATGGCTATGTGAAC
GAGGCCATCTGCGAGCCGGACAAGTACGTGGCCAGCAAGTTCGGCGACTC
CTGCCGCCAGTCACTGTCCGCACTGGAGAGTGCCACCCAGCGGCTGCAGG
TGGAGCTGCCCGCCGCCAGCAAAAAGTATCTGAGAGAGACGTGCAGCGCC
AACTCCAGTCCGAAATTGTTTCCCGGCCACAGTGCCCTGCGCCTGGATAA
TCTCAGCCTAGCCGAGCAGCAGGAGCTTAACGGAGCCGCCTGGTTTCAAG
CGGGCATTCCCAGGGAAATATCCCTGGAGGCCCTGTCCCGACAGAGTCCA
GGTGCGTTTCTAGTGCGCCAGAGCAGCACAAGCCGGGATGTTTCGCCCTC
TCGCTGCGAGTGCCACCACTTCACACGAGTGTCCACTATCTGATCTGCGG
ACGCAAAGGGCTAAAAGAATAAAGGGCTTCACAGGAGTTCAGTCGCTGAG
GCCTGATTCACGCACCACTTCGGGTATGCGACTGTTTGCGTGCGCCGAAC
CTGCACCATCTAGTACGATTCGACATGCCAAGCGCCTATCAGGCGAACCG
TGAAAC
FMO04833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33993-RA | 2404 | CG33993-RA | 405..1497 | 36..1119 | 5115 | 98.5 | Plus |
| CG33993-RB | 1316 | CG33993-RB | 118..738 | 508..1119 | 2755 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5937397..5937735 | 511..173 | 1695 | 100 | Minus |
| 3L | 28110227 | 3L | 5934405..5934694 | 798..509 | 1450 | 100 | Minus |
| 3L | 28110227 | 3L | 5934068..5934335 | 1060..798 | 1060 | 97.4 | Minus |
| 3L | 28110227 | 3L | 5937829..5937968 | 175..36 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:27 has no hits.
FMO04833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:09 Download gff for
FMO04833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33993-RA | 393..1506 | 25..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:17:14 Download gff for
FMO04833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33993-RA | 390..1503 | 25..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:26 Download gff for
FMO04833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33993-RA | 393..1506 | 25..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:26 Download gff for
FMO04833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5937399..5937732 | 176..509 | 100 | <- | Minus |
| 3L | 5937829..5937980 | 25..175 | 96 | | Minus |
| 3L | 5934405..5934693 | 510..798 | 100 | <- | Minus |
| 3L | 5934068..5934334 | 799..1060 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:09 Download gff for
FMO04833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5930929..5931080 | 25..175 | 96 | | Minus |
| arm_3L | 5927505..5927793 | 510..798 | 100 | <- | Minus |
| arm_3L | 5930499..5930832 | 176..509 | 100 | <- | Minus |
| arm_3L | 5927168..5927434 | 799..1060 | 97 | <- | Minus |
