FMO04834.5prime Sequence
565 bp (565 high quality bases) assembled on 2008-08-08
> FMO04834.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCGCCGTTG
ATGCTATAATCAATTACAAGCGCAGTCCCAACGAGGACTTCTACGGTCTG
CTCCATTGCGATGAGAACTCATCGCCCGAGCAGATCCAGGCCGAGTACAA
AGTCCTGGCCCTTCAGTACCATCCCGACAAGAACTCCGGCGACAAGGAGG
CGGAGGCCAAGTTCCAGCAGTTAAAGGAGGCCAAGGAAACCTTGTGCGAT
CCCGAAAAGAGGGCCATCTACGACAAGTGGCGCAACAGCGGCATCTCGAT
GAGCTACAAACAGTGGCTGGGCATGAAGGAGCATGTCGGTCAGGTGAGAA
GATACACGATTGCCGAGAAAGTGGATAAAGAGGTATGCGATATGGGCCAG
GAACTCAGCGAATACAGAGAAGTAGTCGCCCCGTCTCCCTCACTCTGTCT
GCCCTCTCACTTCCTCACTTCGGCACGGCGGGAGCCCCGATCCCTTAAAG
TCGTCCTTGTGTCCCGCTGCACTGCGTCAACGCTTGGCCTTGTTTTTGCA
AGCTTTCTAGACCAT
FMO04834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jdp-RC | 663 | CG2239-RC | 101..610 | 38..547 | 2550 | 100 | Plus |
| jdp-RA | 1960 | CG2239-RA | 101..445 | 38..382 | 1725 | 100 | Plus |
| jdp-RB | 1921 | CG2239-RB | 101..406 | 38..343 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30519443..30519765 | 547..225 | 1615 | 100 | Minus |
| 3R | 32079331 | 3R | 30523227..30523330 | 227..124 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 30526243..30526329 | 124..38 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:50 has no hits.
FMO04834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:08 Download gff for
FMO04834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RC | 101..619 | 38..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:58 Download gff for
FMO04834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RC | 103..621 | 38..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:35 Download gff for
FMO04834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RC | 101..619 | 38..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:35 Download gff for
FMO04834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30519434..30519763 | 227..558 | 98 | <- | Minus |
| 3R | 30523228..30523329 | 125..226 | 100 | <- | Minus |
| 3R | 30526243..30526329 | 38..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:08 Download gff for
FMO04834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26345156..26345485 | 227..558 | 98 | <- | Minus |
| arm_3R | 26348950..26349051 | 125..226 | 100 | <- | Minus |
| arm_3R | 26351965..26352051 | 38..124 | 100 | | Minus |
