FMO04835.5prime Sequence
1056 bp (1037 high quality bases) assembled on 2008-08-08
> FMO04835.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATCTTAAAG
GAGGAGCACCCACACCAGAGCATCGAAACTGCCGCAAATGCGGCAAGGCA
GGCGCAGGTCCGCTGGCGAATGGCGCATCTTAAGGCACTCAGCCGCACTC
GAACACCAGCGCACGGCAATTGCTGCGGTCGCGTCGTCAGTAAAAATCAC
TTTTTCAAGCACAGTCGCGCGTTTCTGTGGTTCCTGCTGTGCAACTTAGT
GATGAACGCGGACGCATTCGCCCACTCCCAGCTGCTCATTAACGTCCAAA
ATCAGGGCGGCGAGGTGATCCAGGAGAGTATTACCTCCAACATTGGCGAG
GACCTGATAACGCTGGAGTTTCAGAAGACCGACGGAACGCTCATCACCCA
GGTCATCGACTTTCGCAATGAGGTTCAAATCCTCAAGGCTCTGGTTCTCG
GCGAGGAGGAGCGTGGCCAGAGCCAGTACCAGGTCATGTGCTTCGCAACC
AAGTTCAACAAGGGCGACTTCATCTCCTCGGCGGCAATGGCCAAGCTGCG
CCAGAAGAATCCGCACACCATCCGCACTCCCGAGGAGGACAAGGGCCGTG
AGACCTTCACCATGAGCAGCTGGGTACAGCTCAACCGCTCGCTGCCCATC
ACCAGACATCTGCAGGGACTCTGCGCCGAGGCCATGGACGCCACCTATGT
CCGGGATGTGGACCTTAAAGCTTGGGCGGAGCTACCAGGCTCCTCGATTT
CCAGCCTGGAGGCCGCCACGGAAAAGTTCCCGGACACGCTCTCGACGCGC
TGCAACGAGGTGAGCAGCCTGTGGGCGCCCTGCCTGTGCAACCTGGAGAC
CTGCATCGGCTGGTATCCCTGCGGGCTCAAGTACTGCAAGGGCAAGGGAG
TCGCCGGAGCGGACTCGTCGGCGCCCAGCAGCAGGCACAGCCGACGATAT
CGCTGCGGCATCAGACCTGCCGCAGGTGCAACACAGTTCACTATATGTGC
GGCAGAAACAACAGTTGCCTTCTGGGATGAGCAGCTTTCTAGACATCGTT
GGCGCG
FMO04835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oaf-RD | 3223 | CG9884-RD | 76..1070 | 39..1030 | 4745 | 98.9 | Plus |
| oaf-RC | 1734 | CG9884-RC | 76..1070 | 39..1030 | 4745 | 98.9 | Plus |
| oaf-RB | 2831 | CG9884-RB | 76..1070 | 39..1030 | 4745 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2495570..2495889 | 420..739 | 1600 | 100 | Plus |
| 2L | 23513712 | 2L | 2493030..2493297 | 39..306 | 1340 | 100 | Plus |
| 2L | 23513712 | 2L | 2496396..2496680 | 736..1015 | 1090 | 96.2 | Plus |
| 2L | 23513712 | 2L | 2495371..2495488 | 303..420 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:28 has no hits.
FMO04835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:33 Download gff for
FMO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oaf-RB | 60..1070 | 24..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:12 Download gff for
FMO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oaf-RC | 60..1070 | 24..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:39 Download gff for
FMO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oaf-RB | 60..1070 | 24..1030 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:39 Download gff for
FMO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2493014..2493296 | 24..305 | 98 | -> | Plus |
| 2L | 2495374..2495487 | 306..419 | 100 | -> | Plus |
| 2L | 2495570..2495888 | 420..738 | 100 | -> | Plus |
| 2L | 2496399..2496693 | 739..1030 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:33 Download gff for
FMO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2496399..2496693 | 739..1030 | 96 | | Plus |
| arm_2L | 2493014..2493296 | 24..305 | 98 | -> | Plus |
| arm_2L | 2495374..2495487 | 306..419 | 100 | -> | Plus |
| arm_2L | 2495570..2495888 | 420..738 | 100 | -> | Plus |
