FMO04837.5prime Sequence
895 bp (650 high quality bases) assembled on 2008-08-04
> FMO04837.5prime
ACTTCGTATAGCATAAAAAAAACGAAGTTATCAGTCGACATGGAAGCAAA
TCAATTGTAGGAAGAAAGTTGTGCAAAGGTGGACATCTTAGAGATGAAGA
AGGCATTGATCCCAACTCCTTCTGCCGAAGAGTATGCAGTTGCTGTAATT
CCGCTCGCAGATAATTTGAAGAAAACTGCTATGGGCGGGGAAAATAAAAG
CGATGAGAAGGGAACTGTTTCTTCTGAGCCAAAGGCTCTCAGTGATCAAA
TCACATCTTCTATGCGTGTTACCAAAAACAAAATCGCCGATGATAAATCT
TCTGACGTTATCACTGATGACGCAACCAATGGCCGTAAGAAGCAAAAGAA
AAATAAAAAGGCAAAAATTCGCCCGTTGACCATGCCCGTGACCTCCAAGG
ATGCCCTTATGGTTTTGAATGAGTTAAAGGGCGTGACAGTCGACAATATG
CAAATAAAACTAGACCACGAGGGAAAGATTATGGCTCGCGTTGTTGTTAA
CTCAAAGAAATACGAAGCCGAGGGTTCTTCAGTAAACTCTGCAAGGAATG
CAGCTTGCGAGAAGGCACTGCAGGAAATCCTAACCACCAAAATGAAAGCT
GTGTTGGACGGGCCAGGAAAGAGCTTGGAAAGCGATGAGGATGATATACT
CGAAAAGATGGCCTCTTATGCCATTCACAAACTTGGTGAGGAATGGAAAG
ACCGATGATATTGATGTCGCACCCTGTATAATGACTTGAAAAAACAAGCA
GACGTCTGTTGTCGACCAAAGAACCCGTTGCCCGAAACATGGAAGAATAT
GCACCCTTGCCTGGATCTTAACTATTGCGCCCCCAGTGCATCTTATGTTT
CAGGTGCACTGGTACAAACCAGATTAAACTTTCTCCATGACGCTG
FMO04837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blanks-RA | 1268 | CG10630-RA | 111..966 | 40..890 | 3870 | 97.4 | Plus |
| CG12493-RB | 1164 | CG12493-RB | 370..833 | 368..836 | 1260 | 85.4 | Plus |
| CG12493-RA | 1173 | CG12493-RA | 379..842 | 368..836 | 1260 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5497825..5498561 | 890..159 | 3145 | 97.6 | Minus |
| 3L | 28110227 | 3L | 4752800..4753187 | 756..368 | 1140 | 87.9 | Minus |
| 3L | 28110227 | 3L | 5498728..5498848 | 160..40 | 515 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:48 has no hits.
FMO04837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:37 Download gff for
FMO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blanks-RA | 111..969 | 40..895 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:57 Download gff for
FMO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10630-RA | 83..941 | 40..895 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:14 Download gff for
FMO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blanks-RA | 111..969 | 40..895 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:14 Download gff for
FMO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5497818..5498559 | 161..895 | 97 | <- | Minus |
| 3L | 5498728..5498848 | 40..160 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:37 Download gff for
FMO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5490918..5491659 | 161..895 | 97 | <- | Minus |
| arm_3L | 5491828..5491948 | 40..160 | 95 | | Minus |
