FMO04838.5prime Sequence
1093 bp (948 high quality bases) assembled on 2008-08-08
> FMO04838.5prime
CCTTTACGAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACC
AAACCTGAAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGT
TGGCAACGCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCG
AACCACTTGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAG
CATGCCGTCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACAC
GCCGGATGACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTG
TCAAGGATGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTG
GCCGTGTCCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGA
TGATCAGGGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTA
CCCACACTTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGA
TTCCAGCGGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAA
GCTGAACTTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGG
AGAGCGTGGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGG
TCCGTGGATGACTCGCAGATTCACACGGAAATACTCCGCCCTGCGGTCCA
TCGTGATGGCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCA
GCCAATGGGAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGC
GGCGGTGGTGTCCAGCACATTGCTCTTAATACGGATGACAATTATCGAGG
CGGTGAGCAACCTAAAGGCTCGAGGAACCGAGTTCCTGACCATCTCATTC
CTCGTACTACGAAGATCCTTCAGGAGCAGCTCTCGCACAGCCGCACCAAA
ATCAAGGAAGACCATGAAGTCTTGAAGAAGTGAACATTTTGATTGACATT
CCACCAGAAACGAATATCTGCTGCAATCTTCCAAAGATCTGCCAGAATAG
ACCCGAACCTCCTTCCTGTGAAATTATCCCATGCTACCATCAC
FMO04838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11796-RA | 1301 | CG11796-RA | 99..1163 | 24..1093 | 4790 | 97.3 | Plus |
| CG11796-RB | 1518 | CG11796-RB | 318..1380 | 26..1093 | 4780 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20438405..20439019 | 1053..437 | 2425 | 96.5 | Minus |
| 3L | 28110227 | 3L | 20439077..20439460 | 437..54 | 1920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:01 has no hits.
FMO04838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:40 Download gff for
FMO04838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11796-RA | 92..1157 | 17..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:48 Download gff for
FMO04838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11796-RA | 88..1153 | 17..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:58 Download gff for
FMO04838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11796-RA | 92..1157 | 17..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:58 Download gff for
FMO04838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20438423..20439018 | 438..1036 | 96 | <- | Minus |
| 3L | 20439077..20439460 | 54..437 | 100 | <- | Minus |
| 3L | 20439528..20439558 | 22..53 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:40 Download gff for
FMO04838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20431523..20432118 | 438..1036 | 96 | <- | Minus |
| arm_3L | 20432177..20432560 | 54..437 | 100 | <- | Minus |
| arm_3L | 20432628..20432658 | 22..53 | 96 | | Minus |
