FMO04840.5prime Sequence
1218 bp (1029 high quality bases) assembled on 2008-08-08
> FMO04840.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGTCATCTTTTA
CGGACGAGGAGTCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTT
CCCGGCACGGATTCGGGTCCCACGGGCAAGAAGGGTCGGCCCAGTTCCGA
TATTACGGCCAATGTAAAGTTGCCACCGCATGGCTATCCATTGGAACACC
CCTTCAACAAGGATGGCTATCGTTATATACTCGCCGAACCGGATCCACAT
GCTCCATTTCGTCAGGAGTTCGACGAGAGCTCCGATTGGGCTGGCAAACC
TATCCCCGGCTGGCTCTACCGCATCCTGGTGCCACATTCTGTGCTCCTGG
CGCTGCATGATCGGGCACCACAGCTGAAAATAAGCGAGGATCGGTTGGCG
GTGACGGGCGAACGTGGTTACTGCATGGTCCGAGCCACACACTCTGTGAA
CCGGGGATGCTGGTACTTTGAGGTCACCATCGAAGAGATGCCCGACGGAG
CTGCCACGCGACTTGGCTGGGGCCGGGAGTACGGCAACTTGCAGGCTCCA
TTGGGATACGACAAGTTCGGTTACTCCTGGAGATCTCGCAAGGGCACCAA
GTTTACCGAGAGCCATGGCAAACACTACAGTGATGCCTATGTGGAGGGCG
ATACATTGGGATTCCTCATAGAGCTGCCAGAGGAGGCGTCGCTCGACTAT
CTGCCCAACACATTCAAAGATCGGCCCCTGGTCAAGTTCAAGTCTCATCT
GTACTACGAGGATAAGGACAAGATCACAGAAACCCTGAAAAATCTGCACA
TCCTGCAGGGCAGCCGCATCGAGTTCTTTAAGAACGGTCAATCGCAGGTG
TGGCATTCGAAGACATTTATGCCGGCAGCTATTTCCCGGCCATCTCGATC
CACAAAAGTGCACGGTCAGCGTAAACTTCGGACCCGCCTTCAGTATCCCG
AGGTGCTCGTCGAGCACAAGCCAAGGGATGCACGATCGCGTGAGAGCTGA
TCACAGAGCATGTTTAGCCGACACCTCTACCTCCAGAACACGATGACGTC
TGCGCTTGATATATGGGTCTGCAGCTTCTAGAACATTCGTTGGCCGCCGG
TCCAGGTATGTCTATCATAATCTATCTAATCCTATCACTAGCTAGGAATC
TGCTGACATGCCTGATCCCACATAACGCCGCCGGTCACATCCAGAAGCTA
TCTGACACAAACACCTGA
FMO04840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ash2-RB | 1413 | CG6677-RB | 187..1235 | 35..1070 | 4920 | 98.8 | Plus |
| ash2-RE | 1271 | CG6677-RE | 73..1093 | 63..1070 | 4780 | 98.7 | Plus |
| ash2-RC | 1949 | CG6677-RC | 751..1771 | 63..1070 | 4780 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24651861..24652241 | 63..443 | 1905 | 100 | Plus |
| 3R | 32079331 | 3R | 24652310..24652590 | 444..724 | 1405 | 100 | Plus |
| 3R | 32079331 | 3R | 24652781..24653029 | 724..969 | 1095 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:55 has no hits.
FMO04840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:07 Download gff for
FMO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RB | 181..1239 | 26..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:34 Download gff for
FMO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RB | 71..1129 | 26..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:35 Download gff for
FMO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RB | 181..1239 | 26..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:35 Download gff for
FMO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24651601..24651630 | 31..62 | 93 | -> | Plus |
| 3R | 24651861..24652241 | 63..443 | 100 | -> | Plus |
| 3R | 24652310..24652590 | 444..724 | 100 | -> | Plus |
| 3R | 24652782..24653039 | 725..977 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:07 Download gff for
FMO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20477323..20477352 | 31..62 | 93 | -> | Plus |
| arm_3R | 20477583..20477963 | 63..443 | 100 | -> | Plus |
| arm_3R | 20478032..20478312 | 444..724 | 100 | -> | Plus |
| arm_3R | 20478504..20478761 | 725..977 | 98 | -> | Plus |
