FMO04843.5prime Sequence
1211 bp (1048 high quality bases) assembled on 2008-08-08
> FMO04843.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCAAGCGCAAG
GCCGAGGACACACAATCCGACAAAATGGCAACGGCCGAGAAAGTAGCACA
GAACGATTACACCATTGGCCTGGTGGATCCCGTTAAGGATTACCAAAAGC
TTATCGAAACACGCGTGCAGGTAGACGAAATCGTGGATGATGATGTCACC
AAGGAGAATTTCGATCGAACGGCTGCAGCGGCGCGTGACGTCATCTGGCG
GCTGTTATTCGACGAGGCCGGTACCTCGCAATCGAACACAGAGAAGGCCA
GCCAATTGCTGGAGGAATACCGTGGTGACGCCTGCTTCTACGACCCGACG
CCGTACAACGAATGGATTGTCAAGCTGAGGGATGAGGTTCTAAAGAAGGA
ACTCCTCGACTTTTGGCGCGATGTGCTGGTGAAGAAGCAACTCGGTCCCT
GTTGGTCACGCGACAGTGATCTCTTTGACAGCGACGACACCCCGCCATTG
GAGTTCTATGCCCATGCCGGTTGTACCGCTCCATTTGCAGCCAGCTTAAA
GGTGCGCGCAGCACTCGAGGAGCAGGCTTCGCTGGATCAGGATGGGCCAG
CGACGCCTACAACTCCGGGTGAACTGAGTGCCGATGATGCCGCCGCTCTG
TCTGGCGAATTTGAGGCCACCCTGACCAAGGAAAATCCGCTCGAGGAATA
CCGAACTCTAATGAAGCGCTTTGTTCTGACCAAAATCATCGTTCCGGACA
GCGTTCACCAGGCCAGCGTGAAGAAGATAGCGGCAGCCGCCAGGGAGATA
ATCTGGAAGCTGCTCTTCGATGGCACACCCTCAGCGGAGGATCAAAACAA
GGCCGCCGAGCTGCTGCAGAGTACAAGGGTGATGCTGGTTTCTATGGGCC
CGACGACTACAACAGTTGGATTTTCAATCTGAGGGATGAGTTCTCACAAA
GAGCTTCTCGACTTTTGCGCGACAGATGGTGAAATGGACTTGTTCCAGTT
GCGCCGCGATTCCGACTATTACGACACGAGATCCGCTGCATTCGAGTTTA
CGAAAGCTGTTGCAGCTCCTTGAGACTGTTAATGATGATGCCAGCCTTCT
GACATTCGTTTGGCGCCGCGGCAAGTTAATGCTAATCTTAATCTTAGCTT
AATCTATCACATGACTTAGATTCTGCATTGACCTATCGCTGTGATTCCTC
ACCATATAACA
FMO04843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoGI-RC | 1438 | CG4930-RC | 110..1142 | 36..1055 | 4825 | 98.6 | Plus |
| EndoGI-RB | 1406 | CG4930-RB | 156..1188 | 36..1055 | 4825 | 98.6 | Plus |
| EndoGI-RA | 1360 | CG4930-RA | 110..1142 | 36..1055 | 4825 | 98.6 | Plus |
| EndoGI-RC | 1438 | CG4930-RC | 974..1083 | 344..454 | 215 | 80.2 | Plus |
| EndoGI-RB | 1406 | CG4930-RB | 1020..1129 | 344..454 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16258245..16259182 | 98..1026 | 4230 | 98.7 | Plus |
| 2L | 23513712 | 2L | 16258114..16258179 | 36..101 | 330 | 100 | Plus |
| 2L | 23513712 | 2L | 16259065..16259156 | 363..454 | 205 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:31 has no hits.
FMO04843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:46 Download gff for
FMO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 104..1154 | 29..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:01 Download gff for
FMO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4930-RA | 116..1166 | 29..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:33 Download gff for
FMO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 104..1154 | 29..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:33 Download gff for
FMO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16258108..16258179 | 29..101 | 95 | -> | Plus |
| 2L | 16258249..16259218 | 102..1057 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:46 Download gff for
FMO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16258108..16258179 | 29..101 | 95 | -> | Plus |
| arm_2L | 16258249..16259218 | 102..1057 | 98 | <- | Plus |
