Clone FMO04846 Report

Search the DGRC for FMO04846

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:48
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33523-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04846.5prime Sequence

758 bp (758 high quality bases) assembled on 2008-08-08

> FMO04846.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCAGGGTC
ACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAA
GATGCACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTG
TCAACTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATT
GCCACCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTT
CCGTGTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCA
TCAACATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGAT
AAGTTCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGC
CGATGTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGG
AGCAGCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAG
CTAGATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAA
GTCCGGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCAT
TCACCCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTT
GCCGGCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTAC
CTGTCCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAAGCAAGCTTTC
TAGACCAT

FMO04846.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RA 1508 CG33523-RA 188..889 39..740 3510 100 Plus
Vap-33B-RE 2672 CG33523-RE 1141..1835 46..740 3475 100 Plus
Vap-33B-RF 2574 CG33523-RF 1044..1737 47..740 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 223..561 1695 100 Plus
3L 28110227 3L 5929104..5929283 561..740 900 100 Plus
3L 28110227 3L 5928536..5928640 120..224 525 100 Plus
3L 28110227 3L 5928223..5928297 47..121 375 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:24:54 has no hits.

FMO04846.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:32 Download gff for FMO04846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 181..897 31..749 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:51 Download gff for FMO04846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 181..897 31..749 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:13 Download gff for FMO04846.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RA 181..897 31..749 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:13 Download gff for FMO04846.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5929104..5929291 561..749 97   Plus
3L 5928537..5928640 121..224 100 -> Plus
3L 5928704..5929039 225..560 100 -> Plus
3L 5928215..5928296 38..120 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:32 Download gff for FMO04846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5921315..5921396 38..120 95 -> Plus
arm_3L 5921637..5921740 121..224 100 -> Plus
arm_3L 5921804..5922139 225..560 100 -> Plus
arm_3L 5922204..5922391 561..749 97   Plus