FMO04848.5prime Sequence
1245 bp (1009 high quality bases) assembled on 2008-08-08
> FMO04848.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGACGGGTTACAAGG
TGGCCAATGGCAATGGACACAGCAATGGAAATGGAAACACGAAGGGAACA
AATGGAACCAATGGACACAGCAATGGACACAAGTCGGCGGACTACACCGC
CCAGGAGAATCCCACCGGAAATGGAAAAATCCAATGCGAGCTTACGCACG
AAGAGCTAAGAGCCCTTCGGGTTCTCAACGAAGACACGTATCCCTATGAG
GTCATCGAGGAGATCGCCGACTTCATTACCAAGGGGTCCGGCATGCGCCC
CAAGATCGGCATCATCTGCGGCTCTGGGCTAGGCTCATTGGCCGATATGA
TGGAGGACCCGAAGATCTTCGAGTATGAGAAGATCCCCAACTTCCCGGTA
TCTACAGTTGAGGGCCATGCCGGACGACTGGTGGTCGGCACACTCGAGGG
CGCCACTGTGATGGCGATGCAGGGCAGGTTCCACTTCTACGAGGGCTATC
CGCTGGCCAAGTGCTCAATGCCGGTTCGCGTGATGAAGCTGTGCGGTGTG
GAATACCTGTTCGCCACCAATGCGGCTGGTGGAATCAATCCACGGTTCGC
GGTGGGCGACATCATGCTGATGCATGACCATGTCAACATGCTGGGCTTTG
CCGGAAATTCTCCGCTCCAGGGACCCAATGACCCACGCTTCGGACCCCGC
TTTCCCGCCCTGGTGAACTCGTACAACAAGGACCTAATCAACAAGGCCAT
CGAGATCGCCAAGGCCATGGGCATAGAGTCCAACATTCACGTCGGCGTAT
ACTCCTGTCTGGGTGGTCCCAACTACGAGACCATCGCCGAGCTGATGCCC
TGCGCATGATGGGCGTGGATGCGGTGGGCATGTCCACCGTACATGAGTCA
TCACTGCACGGCACCTGCGACATGAAGGTATTCGCCTTCAGCCTCATCCC
AAATAAGTGCGCCACCGAGTACAGCGATAGAGGACGATGAGCCAACACGA
TGAGTTATGGCTGGTGCCAAGAACAGCAAAAGCCTGCTGCAACTGTCCTC
CGACTCATCGGGAAATCCACTGCATCGCTGCAAGCTTTCTAGACAATTCG
TTTGGCCGCCGGTCCAAGTATGGTCATAATCTTCTCTATCTTAATCTAAT
CCAAACTAGCTAGGAATCCTGGTTAGACCAGGCCTGAATCCCACAATGAA
AGTGCCCTGCTGGCTAACTGAGAGACGCTATCTTCTCGTAACACA
FMO04848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-RB | 1560 | CG16758-RB | 334..1381 | 35..1071 | 4800 | 98 | Plus |
| CG16758-RH | 1689 | CG16758-RH | 594..1510 | 166..1071 | 4145 | 97.7 | Plus |
| CG16758-RD | 1488 | CG16758-RD | 462..1309 | 235..1071 | 3800 | 97.5 | Plus |
| CG16758-RH | 1689 | CG16758-RH | 334..464 | 35..165 | 655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2499720..2500467 | 979..233 | 3520 | 98.9 | Minus |
| 3L | 28110227 | 3L | 2503143..2503273 | 165..35 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 2501068..2501141 | 239..166 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:43 has no hits.
FMO04848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:22 Download gff for
FMO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RB | 323..1388 | 26..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:20 Download gff for
FMO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RB | 301..1366 | 26..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:36 Download gff for
FMO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RB | 323..1388 | 26..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:36 Download gff for
FMO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2499691..2500462 | 238..1004 | 98 | <- | Minus |
| 3L | 2501070..2501141 | 166..237 | 100 | <- | Minus |
| 3L | 2503143..2503284 | 26..165 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:22 Download gff for
FMO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2499691..2500462 | 238..1004 | 98 | <- | Minus |
| arm_3L | 2501070..2501141 | 166..237 | 100 | <- | Minus |
| arm_3L | 2503143..2503284 | 26..165 | 97 | | Minus |
