FMO04851.5prime Sequence
1223 bp (1054 high quality bases) assembled on 2008-08-08
> FMO04851.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACTGCCA
CCATCGCATTGAAGTGCCCCTGCGGGCCGGAAAGAAAATGAAGAAGCGTC
GGGAGCTGGACGCCCTGATAGCCTCCCAGTCGTCCTCGGGCAAGAGAGCC
AACCGGAGAGTCCCCGGAGGCACCAACTCCCAGGACAAGCTGCTCTCCGT
CTCGACCGACGACCCTGAGGATTACGCATGGACAAATGTCGCTGGCAGTC
GCCGCAGCCATCGAAAAATAGCCTATTTCCGCATGTGCGGCCCGCTTCTA
TTCGGCATTATGGGCATTCTGATTGTGGGAATTTTGTACTGGCTCTACTT
CGATCTGCGCCAGCAACTCACCGACTATCGCCAGAAGATCGAGGAGGTGT
CTGCCATGAGCAAGAACTTCCCGGACACCCTGCAAAGATGGCACGAGACT
TCGTCCTACCTGCTGAAGAACCAAACAGCCGTCATTTCGGAAATAAATGA
TTTGCAAAAATCAATGGAGAGCCTGCGGAACAACTTTAGCAACCTGGAGG
CGGCCGTGGCAGCGCAAAGAAACCACGGCAAGGACGAGAAGTTGGTGGCT
GATTTCGGGGCCAAGATAGAAGCCGTCGCCACCGACATAGAGGCCATCAA
GGAGCACTACAATAAGTACACCGAGGTGCAGAAAACACTGCAGGCCGAAA
CGGAAGCCTTAAAGCTCAATCTCTCACAGCTACCCACGATTCAGGCTAAC
GCTTTACCCGCAAACTTATCGGATGATATTGCTGCGCTGAACAAAACCAC
TTTTAATTCATTTAAACTACTGGCCAACGATCTGAAGAATGTGAATATAC
CCTAAGTCAAACAACGAAAATCCTCAGCGAGGAATATCTCTGCACAGACG
AAAATAGACGACCTGCTGGATCGATCTGAAAACATTACGTCCCATGTACA
CAATAGTAACAGCTGGCCGGAATATAAACAGAAAGTGACCAGTTCGATGA
TCTTTGGAGAGAATTGAAGAAGAGATACGCTGCAACAACAAGACAATATT
GCTGGCGCTTCCGTGATCAGCTAAGAACTTTGCATTCGAGCATGGTCATT
TAGCCCACAGCGAGACGGATCCGTAATCCAAGCCGACGAATGCCGTCAGC
CGGAGTCTAGCGCTTGCAATGTCTACTGAGCTTCGGAATCTTGAAGCGTG
TGTCGAGACTTTCATGTAACATC
FMO04851.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3907-RA | 1701 | CG3907-RA | 158..1230 | 39..1095 | 4885 | 98 | Plus |
| CG3907-RB | 1739 | CG3907-RB | 196..1268 | 39..1095 | 4885 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24021003..24021320 | 714..397 | 1590 | 100 | Minus |
| 2R | 25286936 | 2R | 24021790..24021982 | 231..39 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 24021376..24021542 | 397..231 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 24020757..24020942 | 896..713 | 830 | 98.9 | Minus |
| 2R | 25286936 | 2R | 24020566..24020700 | 1024..895 | 415 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:57:56 has no hits.
FMO04851.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:52 Download gff for
FMO04851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3907-RB | 196..1321 | 39..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:53 Download gff for
FMO04851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3907-RA | 157..1282 | 39..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:44 Download gff for
FMO04851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3907-RB | 196..1321 | 39..1140 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:44 Download gff for
FMO04851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24020573..24020697 | 898..1017 | 95 | <- | Minus |
| 2R | 24020755..24020940 | 715..897 | 98 | <- | Minus |
| 2R | 24021003..24021319 | 398..714 | 100 | <- | Minus |
| 2R | 24021376..24021541 | 232..397 | 100 | <- | Minus |
| 2R | 24021790..24021982 | 39..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:52 Download gff for
FMO04851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19908096..19908220 | 898..1017 | 95 | <- | Minus |
| arm_2R | 19908278..19908463 | 715..897 | 98 | <- | Minus |
| arm_2R | 19908526..19908842 | 398..714 | 100 | <- | Minus |
| arm_2R | 19908899..19909064 | 232..397 | 100 | <- | Minus |
| arm_2R | 19909313..19909505 | 39..231 | 100 | | Minus |
