FMO04854.5prime Sequence
1175 bp (1034 high quality bases) assembled on 2008-08-08
> FMO04854.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGAACAAAAC
GATTCCAACGGAAACTACGACGATGGTGAAGAGATCACCGAGCCAGAGCA
GCTGCGCAAACTGTTCATCGGCGGACTGGACTACCGCACCACAGATGATG
GCCTGAAGGCTCACTTCGAGAAGTGGGGCAACATTGTCGACGTGGTGGTG
ATGAAGGATCCCAAGACGAAGCGCTCTCGCGGCTTCGGTTTCATCACGTA
CTCCCAGTCGTACATGATCGACAATGCGCAGAATGCCAGGCCACACAAGA
TCGATGGACGCACCGTGGAGCCCAAGAGGGCTGTGCCACGCCAGGAGATC
GATTCCCCGAATGCGGGAGCCACGGTAAAGAAGCTCTTTGTGGGCGGGCT
TCGAGACGATCACGATGAAGAGTGCCTGCGCGAGTACTTCAAGGACTTTG
GCCAGATCGTGAGCGTGAACATTGTTTCCGACAAGGACACCGGCAAGAAG
CGCGGCTTCGCCTTCATTGAGTTCGATGACTACGATCCCGTTGACAAAAT
CATCCTTCAGAAGACCCACTCCATCAAGAACAAGACCCTGGACGTGAAGA
AGGCTATTGCCAAGCAGGATATGGATCGACAGGGCGGAGGTGGCGGACGC
GGAGGTCCTCGAGCTGGCGGTCGCGGTGGTCAGGGTGACCGCGGCCAGGG
AGGCGGTGGCTGGGGAGGCCAGAACAGACAGAACGGTGGGGGCAACTGGG
GCGGAGCTGGCGGCGGCGGAGATTCGGCAACAGCGGCGGTAACTTTGGAG
GCGGTCAGGCGGCGGCTCTGGCGGTTGGAATCAGCAAGGCGGAAGCGGAG
TGGTCCATGGAATAACCAGGTGGCGGCAACGGCGGCTGGAACGGTGGTGT
GCGGCGCTACGCGCGAAACAGCATGGCAGCTGGGCGTACGTGTGAGTGTG
TGCGTTGCTTCGAATGATACCAGCAGAGCTACGCGCGTCCACAGCGCACA
GCACTTTGCACAACGTCCAGCTCCTACAGTCAGAGTGGTGTTGAGATTCA
CAGTAACAGTGAAGTCAGGCTTGCTTGCACACCTACACACCGAGGTGTTG
TCAGATGTAATTGGAGCGTCATAACGTTACCAGCCTTCTGAGACTTCCGT
CGACCGCCGGCCCAAGTCAAGTGTG
FMO04854.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 145..1175 | 36..1032 | 4300 | 96.6 | Plus |
| Hrb87F-RD | 1587 | CG12749-RD | 145..1175 | 36..1032 | 4300 | 96.6 | Plus |
| Hrb87F-RC | 1810 | CG12749-RC | 145..1175 | 36..1032 | 4300 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658829..13659650 | 899..82 | 3910 | 99.5 | Minus |
| 3R | 32079331 | 3R | 28600724..28601188 | 84..548 | 855 | 78.9 | Plus |
| 3R | 32079331 | 3R | 13660340..13660387 | 83..36 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:45 has no hits.
FMO04854.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:25 Download gff for
FMO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 140..1030 | 29..915 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:45 Download gff for
FMO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RB | 128..1054 | 29..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:22 Download gff for
FMO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 140..1030 | 29..915 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:22 Download gff for
FMO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658811..13659648 | 84..915 | 99 | <- | Minus |
| 3R | 13660340..13660390 | 31..83 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:25 Download gff for
FMO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484533..9485370 | 84..915 | 99 | <- | Minus |
| arm_3R | 9486062..9486112 | 31..83 | 94 | <- | Minus |
