FMO04856.5prime Sequence
1206 bp (1023 high quality bases) assembled on 2008-08-08
> FMO04856.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAAACTCCG
CCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACGTCTCACCTGGTAC
AAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCAGCGATGCCTCGGT
GCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTGCAGGAGAAGAACA
TGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGTCCAGCTCAACGAA
AATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGACTTTCAAAGATGG
CCGAGATGATCTGACCGATCGCATAGACTTTATAGTTTGCCTGGGTGGCG
ATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCAATCTGTGCCCCCC
GTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCACACCCTTCCGTTT
CAATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAGGGTCACGCTGCCC
TAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCGCAGGAGCGATAGG
AAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATGGTGAGGCGCGACC
TGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTCATTGATCGTGGTC
CATCGCCGTATCTGAGCAATATTGATCTGTTTCTGGACGGAAAGTATATC
ACGTCGGTGCAGGGCGACGGTCTGATCGTATCGACGCCCACGGGAAGCAC
GGCATATGCGGCGGCGGCCGGTGCGTCCATGATCCATCCCTCCGTGCCGG
CGATTATGGTGACTCCCATCTGCCCGCATTCGCTTAGCTTCCGACCCAGT
GTGGTGCCAGCATGAGTGGAGCTGAAGATATCAGTATCCCCCGAGAGCCG
CAACACATCGTGGGTTAGCTTCGATGGACGCAACAGGCATGAGCTCTTCC
ATGACGACAGCCTTCGCGTGACCACCTCCATTTATCACGTGCCATGCATC
TGCGCCAGATCAGATATCCGACTGTTTCGCCTCCTAGCGACGTACTGCAC
TGATTGTGCTCAGCGACGATGCTGACGACTGTCGATCTGACGCATCGAAT
CGAGATCCTGATGAATCGATACTTGAACTGACGAGGGCAGCTTTCTAACT
GTGACGGGCAGGTAAGGCTAGCTACTAATCAAACTCAATCCCACCTATGG
CTCATT
FMO04856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 304..1340 | 37..1067 | 4885 | 98.5 | Plus |
| CG33156-RB | 1824 | CG33156-RB | 333..1369 | 37..1067 | 4885 | 98.5 | Plus |
| CG33156-RE | 2330 | CG33156-RE | 839..1875 | 37..1067 | 4885 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548954..13549536 | 877..295 | 2870 | 99.5 | Minus |
| 2R | 25286936 | 2R | 13549599..13549856 | 294..37 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538198..13538468 | 877..607 | 740 | 84.9 | Minus |
| 2R | 25286936 | 2R | 13548736..13548896 | 1034..876 | 665 | 95.7 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 525..295 | 570 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13539104..13539288 | 225..38 | 440 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13537924..13538051 | 1003..876 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:26 has no hits.
FMO04856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:00 Download gff for
FMO04856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 832..1866 | 32..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:50 Download gff for
FMO04856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 829..1863 | 32..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:59 Download gff for
FMO04856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 832..1866 | 32..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:59 Download gff for
FMO04856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548708..13548894 | 878..1059 | 94 | <- | Minus |
| 2R | 13548954..13549536 | 295..877 | 99 | <- | Minus |
| 2R | 13549599..13549863 | 32..294 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:00 Download gff for
FMO04856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436213..9436399 | 878..1059 | 94 | <- | Minus |
| arm_2R | 9436459..9437041 | 295..877 | 99 | <- | Minus |
| arm_2R | 9437104..9437368 | 32..294 | 99 | | Minus |
