FMO04857.5prime Sequence
1224 bp (1041 high quality bases) assembled on 2008-08-08
> FMO04857.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATAGCATAC
ACATGAACGCCAATACGCTGAAGTACATCAGCCTGCTGACGCTGACCCTG
CAGAATGCCATCCTGGGCCTCAGCATGCGCTACGCCCGCACCCGGCCAGG
CGACATCTTCCTCAGCTCCACGGCCGTACTCATGGCAGAGTTCGCCAAAC
TGATCACGTGCCTGTTCCTGGTCTTCAACGAGGAGGGCAAGGATGCCCAG
AAGTTTGTACGCTCGCTGCACAAGACCATCATTGCGAATCCCATGGACAC
GCTGAAGGTGTGTGTCCCCTCGCTGGTCTATATCGTTCAGAACAATCTGC
TGTACGTCTCTGCGTCCCATTTGGATGCGGCCACCTACCAGGTGACGTAC
CAGCTGAAGATTCTCACCACGGCCATGTTCGCGGTTGTCATTCTGCGCCG
CAAGCTGCTGAACACGCAGTGGGGTGCGCTGCTGCTCCTGGTGATGGGCA
TCGTCCTGGTGCAGTTGGCCCAAACGGAGGGTCCGACGAGTGGCTCAGCC
GGTGGTGCCGCAGCTGCAGCCACGGCCGCCTCCTCTGGCGGTGCTCCCGA
GCAGAACAGGATGCTCGGACTGTGGGCCGCACTGGGCGCCTGCTTCCTCT
CCGGATTCGCGGGCATCTACTTTGAGAAGATCCTCAAGGGTGCCGAGATC
TCCGTGTGGATGAGGAATGTGCAGTTGAGTCTGCTCAGCATTCCCTTCGG
CCTGCTCACCTGTTTCGTTAACGACGGCAGTAGGATCTTCGACCAGGGAT
TCTTCAAGGGCTACGATCTGTTTGTCTGGTACCTGGTCCTGCTGCAGCCG
GCGGTGGATTGATCGTTGCCGTGGTGGTCAAGTACGCGGATAACATTCTC
AAAGGCTTCGCCACCTCGCTGGCCATCATCATCTCGTGCGTGCCTCCATA
TACATCTTCGACTTCAATCTCACGCTGCAGTTCAGCTTCGGAGCTGCTGT
CATCGCCTCCATTTTTCTCTACGGCTACGATCGCCAGGTCGGCGCGAAGC
CAACTTATGCACGTCTGGCGGCGAATGAAGAGAAAGCTACTGCGCGGCGT
CCCAAGCTTCTATAAACAATTCCGTTTGGCCCGCGTCCCAGTAAATGTCC
TATCTATCCTATCTTACCTAATTCAACTAGCCTAAGAGAAATCCGGGCCA
TGAACATAATGTGTCTGTGCAGAT
FMO04857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csat-RC | 2120 | CG2675-RC | 332..1395 | 37..1093 | 4895 | 97.9 | Plus |
| Csat-RA | 2013 | CG2675-RA | 225..1288 | 37..1093 | 4895 | 97.9 | Plus |
| Csat-RB | 2110 | CG2675-RB | 339..1385 | 54..1093 | 4810 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2701886..2702776 | 1055..173 | 4040 | 98.2 | Minus |
| X | 23542271 | X | 2703288..2703407 | 173..54 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:35 has no hits.
FMO04857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:02 Download gff for
FMO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csat-RA | 220..1280 | 31..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:19 Download gff for
FMO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csat-RA | 251..1311 | 31..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:23 Download gff for
FMO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csat-RA | 220..1280 | 31..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:23 Download gff for
FMO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2701857..2702775 | 174..1084 | 97 | <- | Minus |
| X | 2703288..2703407 | 54..173 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:02 Download gff for
FMO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2595890..2596808 | 174..1084 | 97 | <- | Minus |
| arm_X | 2597321..2597440 | 54..173 | 100 | <- | Minus |
