FMO04858.5prime Sequence
1213 bp (1087 high quality bases) assembled on 2008-08-08
> FMO04858.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCAAGGAAA
AGATTCACATTAACATTGTCGTGATCGGACACGTCGATTCCGGTAAGTCG
ACCACCACCGGACACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTAC
CATCGAGAAGTTCGAGAAGGAGGCCCAGGAGATGGGAAAGGGATCCTTCA
AGTACGCCTGGGTTTTGGATAAGTTGAAGGCTGAGCGCGAGCGTGGTATC
ACCATCGATATCGCCCTGTGGAAGTTCGAAACTGCCAAGTACTACGTGAC
CATCATTGATGCCCCCGGACACAGGGATTTCATCAAGAACATGATCACTG
GTACCTCGCAGGCCGATTGCGCCGTGCTGATTGTCGCCGCCGGAACCGGA
GAATTCGAGGCAGGTATCTCGAAGAACGGCCAGACCCGCGAGCACGCCCT
GCTCGCCTTCACCCTGGGTGTGAAGCAGCTGATCGTTGGTGTGAACAAGA
TGGACTCCTCCGAGCCACCATACAGCGAGGCCCGTTATGAGGAAATCAAG
AAGGAAGTGTCCTCTTACATCAAGAAGATCGGCTACAACCCAGCCGCCGT
TGCCTTCGTGCCCATTTCCGGATGGCACGGCGACAACATGTTGGAACCCT
CTACCAACATGCCCTGGTTCAAGGGATGGAAGGTGGAGCGCAAGGAGGGT
AACGCTGACGGCAAGACCCTGATCGATGCCCTCGATGCCATCCTTCCCCC
AGCCCGTCCCACCGACAAGGCCCTGCGTCTGCCCCTGCAGGATGTGTACA
AAATTGGCGGTATTGGAACAGTACCCGTGGGTCGTGTGGAGACTGGTGTG
CTGAAGCCCGGTACCGTTGTGGTCTTCGCCCCTGCTAACATCACCACTGA
GGTCAAGTCCGTGGAGATGCACCACGAGGCCCTGCAGAAGGCCGTTCCCG
GAGACACGTTGGCTTCAACGTCAGAACGTGTCCGTGAAGAGCTGCGTCGT
GCTACGTTGCCGGTGACTCCAGCTACCCCCCAGGGAGCCGCCGACTCCCC
GCCCAGTCATCGTGCTGACCACCCCGTCAGATTGCCAACCGCTACCCCCC
TGTGATGCCCACCGCTCCAATTGCTGCAGTCCTGAAATCAGGGAAGGTCA
CCGTTTCCGGCAGAACCGGAGAACCAAGTTCTCTCAGACTTGGCGAAGTC
GTCACTCATCGTT
FMO04858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 2278 | CG8280-RC | 89..1170 | 36..1104 | 5030 | 98.3 | Plus |
| Ef1alpha48D-RE | 2076 | CG8280-RE | 129..1210 | 36..1104 | 5030 | 98.3 | Plus |
| Ef1alpha48D-RD | 1979 | CG8280-RD | 32..1113 | 36..1104 | 5030 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11893573..11894654 | 36..1104 | 4775 | 98.2 | Plus |
| 3R | 32079331 | 3R | 31740347..31741172 | 38..863 | 2270 | 85 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:06 has no hits.
FMO04858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:12 Download gff for
FMO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RA | 71..1166 | 25..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:36 Download gff for
FMO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RB | 94..1189 | 25..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:42 Download gff for
FMO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RD | 21..1116 | 25..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:42 Download gff for
FMO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11893562..11894657 | 25..1107 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:12 Download gff for
FMO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7781067..7782162 | 25..1107 | 97 | | Plus |
