FMO04861.5prime Sequence
1020 bp (1020 high quality bases) assembled on 2008-08-08
> FMO04861.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAACTGAGC
GTGAGCGCGTATCGGGCGCATGCATCCGCACACAAGAAGATCCTCTCCAG
CGGCTATCACTCACAGCTCAACTACGGCAGCACTGGAGCGGCAGCGGCAT
CCTCCTCGTCGTCGGGGGCCACTGCAACGGGCCTATATACGATGGAAGCG
CACGAGCACGAAGCGGGCAAGTTTGTCAAGGATGTGGCCCGTCAGGTGCA
CGACTGCAACAGCGACACGGATGTCATCAGTCCCACGGGCACCAGTATCT
CCGGTGGCGGAGGAGGCGGCGGAGCAGGCGGTGCCGGCGGATCCGGTGGT
GCTGGCGGACACAGCGACGGTGGCTATCACAAGCGGCACCACCACAAGAT
GGTCCGCGATGACGACAACAACAGTGCGGCGCACTCATCGGACAGCAAGA
GTCCCAGCCAGCGATCCGGCAGCTCGTCGCTAACCAGTGGGCAACTGCAC
CACTGCGGCTGCCCCACCACCACTAGTTTAAGGTATACTGAGAGGGATAG
ACTTATACTGACGCCGGCACAACCGCATCAACATCCGCATACGCATCCGC
ATCCGTATCCGCATCCGCACCAGGCCCGTCAGCGGCGCCAGGTGCGCCTC
CATGTGAACAGTCCGTCCTCCGACCAGAGCGCCAGCACGCCGGTGGGTCC
CAGGCCATTGCCAGCGATGAAGACCCTCTCGTCGTTCATCAGCGAGCATC
CCGAGGAGCTTGTGGCAGCGGAGGATCAGTCCCGGAGTGGCGCCTTCGCC
ACCTCCTCGGCATCCGCATCCGCAGCCGCCACTGCCAATGCCTCCAATGG
CCAGCAGCAGACACGAAGTGGAAGAGCCTGCGAGCCGGGATGGCCTACTA
CTGCTCCCTGCGGCGCATCAAGAGGACGTTGCCACCCACAGTCCCACTTT
CAGTGTTCCGTTATTGCGTATCCGGCGTTTTGCTAGCGTAACGCAGGCTT
TCTAGACCATTCGGTTGGCG
FMO04861.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cngl-RF | 5515 | CG43395-RF | 2250..3202 | 39..989 | 4640 | 99.4 | Plus |
| Cngl-RE | 11745 | CG43395-RE | 2250..2674 | 39..463 | 2125 | 100 | Plus |
| Cngl-RD | 11700 | CG43395-RD | 2250..2674 | 39..463 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15408046..15408574 | 989..463 | 2420 | 98.9 | Minus |
| X | 23542271 | X | 15410832..15411104 | 463..191 | 1365 | 100 | Minus |
| X | 23542271 | X | 15419963..15420115 | 191..39 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:11 has no hits.
FMO04861.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:40 Download gff for
FMO04861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cngl-RF | 2211..3172 | 30..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:46 Download gff for
FMO04861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18210-RA | 1342..2303 | 30..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:22 Download gff for
FMO04861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cngl-RF | 2245..3206 | 30..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:22 Download gff for
FMO04861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15408042..15408573 | 464..992 | 98 | <- | Minus |
| X | 15410832..15411103 | 192..463 | 100 | <- | Minus |
| X | 15419963..15420120 | 30..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:40 Download gff for
FMO04861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15302075..15302606 | 464..992 | 98 | <- | Minus |
| arm_X | 15304865..15305136 | 192..463 | 100 | <- | Minus |
| arm_X | 15313996..15314153 | 30..191 | 97 | | Minus |
