FMO04862.5prime Sequence
787 bp (787 high quality bases) assembled on 2008-08-08
> FMO04862.5prime
CTAAAGGGGGGATCTCGAGGGATCCATAACTTCGTATAGCATACATTATA
CGAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTG
CTAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGA
CGATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATT
TCCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTT
CAGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGA
TCTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATT
CCGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGAT
GGCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGA
CTCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATA
AGGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAG
GTCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCA
GGGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCA
CCTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGAT
GATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGA
CATTGATGAGCCCAAGGTAGCAAGCTTTCTAGACCAT
FMO04862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-RH | 1121 | CG31764-RH | 232..933 | 68..769 | 3510 | 100 | Plus |
| vir-1-RC | 1048 | CG31764-RC | 159..860 | 68..769 | 3510 | 100 | Plus |
| vir-1-RB | 1849 | CG31764-RB | 243..941 | 68..766 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12407182..12407468 | 769..483 | 1435 | 100 | Minus |
| 2L | 23513712 | 2L | 12407548..12407735 | 486..299 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 12409456..12409626 | 299..129 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 12421641..12421704 | 131..68 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:23 has no hits.
FMO04862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:27 Download gff for
FMO04862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RC | 159..872 | 68..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:24:00 Download gff for
FMO04862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RC | 138..851 | 68..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:25 Download gff for
FMO04862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RC | 159..872 | 68..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:25 Download gff for
FMO04862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12407170..12407466 | 485..781 | 98 | <- | Minus |
| 2L | 12407550..12407734 | 300..484 | 100 | <- | Minus |
| 2L | 12409456..12409623 | 132..299 | 100 | <- | Minus |
| 2L | 12421641..12421704 | 68..131 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:27 Download gff for
FMO04862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12407170..12407466 | 485..781 | 98 | <- | Minus |
| arm_2L | 12407550..12407734 | 300..484 | 100 | <- | Minus |
| arm_2L | 12409456..12409623 | 132..299 | 100 | <- | Minus |
| arm_2L | 12421641..12421704 | 68..131 | 100 | == | Minus |
