FMO04864.5prime Sequence
1225 bp (1041 high quality bases) assembled on 2008-08-08
> FMO04864.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGGCTCAAAT
CGGGAGTGCTTTCGCTGCTCCTGCTGACCACCTTCTTGGCCCTGGGCGAG
TGCTTTTGGCCATTTAGCAAATGGCATGGAAGAAATGATAATCCTTCTGC
CCCCCCTGAACCCAAGCTGTCGCCAGTGATATTCGTACCCGGTGACGGAG
GCTCCCAAATGGATGCTCGGCTAAATAAGCCCAACTCTCCCTATTTAATT
TGCCAAAAGACCCACGATTGGTACAACCTGTGGCTGGATCTGGAGCAGTT
GGTCATCCCCATTGTCTACTGTTGGATAGACAATGTCAAGCTGTACTACG
ACAAGGTCACGAGGACCACCCACAACACTCCTGGTGTGGAGACGAGGATA
CCCGGCTGGGGCAATCCCGAGGTGGTCGAGTGGATCGATCCCACCAAGAA
CAGCGCCGGAGCCTACTTCAAGGATATAGCCAATGAGCTGGTGAAACTTG
GATATATTCGCAAACAAAATATTCATGGAGCACCCTATGACTTCCGCAAA
GCGCCAAATGAGAACCAACAGTTCTTCATCGATCTCAAGCAGCTGGTGGA
GGACTCCTATGAGGCCAACAATCAGTCGGCTGTGACCTTCATCTCGCACA
GCATGGGCAGTCTCATGACCCTGGTTTTCTTGCAGGAGCAAACCCTCCAA
TGGAAGGCGAAATACGTGAAGCGCATGATCAGCCTGGCGGGAGTTTGGGC
GGGAAGTTTTAAGGCTGTGAAAGTGTTTGCCATGGGCGATGATCTCGACT
CGTTCGCCCTGAGTGCCAAGATCCTCAAGGCGGAACAGATAACACACCCA
TCCACGGCCTGGTTGCTGCCCTCGCCACTGTTTTGGAAGCCAACCGAGTG
CTCGCCATGACTCAAGCAGAAACTAAACGATGGCACAGCTGGAAGAGTTC
TTCAAAAACCTCGACTACATGACGGGCTGGGAAATGCGCAAGGACACGAT
TCGGTACAACCGAAACTTCGATCCACGAATGTGGAACTGCACTGTTTTCT
ATGGCGAAAGCATCGACCGTCGAAAAGAACTGCAGTAAAAAGAAAATCGA
CTAATGGGAAACGCCCAAGTTGAATAATTGGTCTCGGCGACGCACCGTAA
CCAGCGTTCTCTGCGAGCTGCAAAATTGACACTATTCCTAAGCGCCTATA
AAACACCTGTCTCTCCAGAAGAACA
FMO04864.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31683-RB | 1823 | CG31683-RB | 437..1629 | 38..1220 | 5210 | 96.8 | Plus |
| CG31683-RA | 2031 | CG31683-RA | 437..1629 | 38..1220 | 5210 | 96.8 | Plus |
| CG18858-RB | 2029 | CG18858-RB | 431..1623 | 38..1220 | 5180 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20448362..20448873 | 1067..558 | 2305 | 98.4 | Minus |
| 2L | 23513712 | 2L | 20457479..20457994 | 1067..554 | 2295 | 98.1 | Minus |
| 2L | 23513712 | 2L | 20448937..20449314 | 562..185 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20458054..20458431 | 562..185 | 1860 | 99.5 | Minus |
| 2L | 23513712 | 2L | 20449381..20449528 | 185..38 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 20458498..20458645 | 185..38 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:12 has no hits.
FMO04864.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:57 Download gff for
FMO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31683-RA | 437..1629 | 38..1220 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:07 Download gff for
FMO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31683-RA | 446..1638 | 38..1220 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:54 Download gff for
FMO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31683-RA | 437..1629 | 38..1220 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:54 Download gff for
FMO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20448362..20448873 | 558..1067 | 98 | <- | Minus |
| 2L | 20448942..20449313 | 186..557 | 100 | <- | Minus |
| 2L | 20449381..20449528 | 38..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:57 Download gff for
FMO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20448362..20448873 | 558..1067 | 98 | <- | Minus |
| arm_2L | 20448942..20449313 | 186..557 | 100 | <- | Minus |
| arm_2L | 20449381..20449528 | 38..185 | 100 | | Minus |
