FMO04865.5prime Sequence
1208 bp (1024 high quality bases) assembled on 2008-08-08
> FMO04865.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTTGCAGT
GGCAAAATGAGGTGGTGCGGATTACGCGCCAAGTGAAGCGCAATCTACCG
CACCGAAATTTCCGAGAGATTAACTTTGATCGCGAGACCATAAGGCAAGG
AATCACCCCCCTGACCTACGATGAGGCGCGCCGTCTTAAGGGACCAGTTT
TCGAGGCTCTGGAGGATGAGTTGCGTCGAGCAGGATGCACCATGCTGCCG
GAGTTTCTCCACTGCCTGGCCACCAAGGAGAATGCTCTTTTCGAGAGCCT
AAATATCCGGGAACGTCTATCCGATGACTCGGAATTGCTCTACGGAATGG
TGGATCGACTCCGGGATGCCGAACTGGCTGTTTGCCTGAACAAGCACCGG
GGTCTCAAAAAGTGTTTTGGCCTATTCTTCGAGACCATGCAGCTGCTGGA
GCCGTATCGTCAGAAATACGCATACGCCCTGGTGGCCCTCAATGAGCACA
TCATCTCGTTGTGCCGCAACATTGCCGGCCAGGAACATGATGCCGCCGAG
TACATATCCCGCATCTACTACATCTATTCCATGTACCTGGTGAACACAGG
CCAGCGAACCTCGGCCATCAATTTCCTACAAATTGCCATGGATCTGGTGC
GTGGTCACGTGTGGACCGCCGAGGTGGGAATGCCCGCAGGCAGTCTTACG
CTCCACGAGCTGGTGGCCCAGAATCTCGCCAGGCAGCTCCTCATCCAGGG
CAAGTCCATTGTACGCCAGCATCCCGAGGATGCGGTGGCCATGGCCCGAC
GAGCCACTGTACTAATAGCCGAAATTGGCAGGGATAAGAACATGGAGATT
TTCTGTGACACTTTTCTGGAGCGTGCCTACTTTCTAATGGAGATTGGTAA
CTTTAACTCGGCGCAGCAGTGCCTTGAGCAGATCAAAACCCAGATCCTGT
CTGCACCGAATATCGATTCGTTAGCTCAACATTAAGTACTACCTGATCAA
GGCATGTTCGAGATTTTGAGCACGTGAGAGCCACTCTGTACAGAGAGCTC
TTCGCTATCCCGACTCTATACCACCGCGATTTGAGCAAGATCTTTGCATC
TGGAAGATCTTTGGCAGACACCGATGAAGTATCGCTAGAATGCTTGACTG
CAGGCATCACGCGACTACGATTCGCACGCGCGAGAGTTGCACAATTCTGC
AGGCCACA
FMO04865.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31798-RB | 1643 | CG31798-RB | 69..1198 | 37..1137 | 4935 | 97.3 | Plus |
| CG31798-RA | 1913 | CG31798-RA | 69..1198 | 37..1137 | 4935 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19394228..19395015 | 37..824 | 3940 | 100 | Plus |
| 2L | 23513712 | 2L | 19395076..19395251 | 825..998 | 765 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:19 has no hits.
FMO04865.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:17 Download gff for
FMO04865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31798-RA | 65..1156 | 31..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:37 Download gff for
FMO04865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31798-RA | 65..1156 | 31..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:48 Download gff for
FMO04865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31798-RA | 65..1156 | 31..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:48 Download gff for
FMO04865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19394224..19395015 | 31..824 | 99 | -> | Plus |
| 2L | 19395076..19395271 | 825..1013 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:17 Download gff for
FMO04865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19394224..19395015 | 31..824 | 99 | -> | Plus |
| arm_2L | 19395076..19395271 | 825..1013 | 95 | -> | Plus |
